Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq26 93.3 3e-14 seq220 82.4 5e-11 >seq26 Length=11430413 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/234 (69%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||||| || | | || || || ||||| || || || || |||||||| ||| Sbjct 3031987 TGCCACCTCTCAGACGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCG- 3032045 Query 15008 TGAGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTT 15065 || || | | | ||||||| | || |||||||| | |||| | ||| |||||| Sbjct 3032046 -GACAAGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGG 3032104 Query 15066 TGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125 |||||| ||||||||||| || ||| || ||| | || || || || || || Sbjct 3032105 TGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTC 3032164 Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || || | || ||||| || |||||||| || || || || || ||||| || Sbjct 3032165 AACCTCCAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACGAAGATCTGCATTTT 3032218 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAA--TTCTCGCGTCTTCTAAT 15030 ||| ||||| || || || || |||||||| ||| || || | | | ||||||| | Sbjct 3031328 ATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCG--GACAAGGTGCGCCCGTCTTCCAGC 3031385 Query 15031 TGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATT 15090 || |||||||| | |||| | ||| |||||| |||||| ||||||||||| || Sbjct 3031386 TGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGTGGAATGCCTTCCTTGTCCTGGATC 3031445 Query 15091 TTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCT 15150 ||| || ||| | || || || || || || || || | || ||||| || ||| Sbjct 3031446 TTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGAGTGATGGTCTTCCCT 3031505 Query 15151 GTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| || || || || || ||||| Sbjct 3031506 GTCAGGGTCTTCACGAAGATCTGCAT 3031531 >seq220 Length=9331205 Score = 82.4 bits (90), Expect = 5e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| || || || || || || |||||||| || || | | | ||||||| | || Sbjct 1328462 ATGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTG 1328521 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 || ||||| | ||||| | ||| ||||| || || || |||||||| || || Sbjct 1328522 CTTCCCAGCAAAGATCAACCCCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTT 1328581 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | || ||| | || ||||||||||| || || || | ||| ||||| || || || Sbjct 1328582 GGCCTTCACATTCTCAATAGTATCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGT 1328641 Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177 ||| || || ||||| || |||||| Sbjct 1328642 CAGGGTCTTCACAAAGATCTGCATA 1328666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357375653001605