Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq26 111 1e-19 seq220 93.3 4e-14 seq29 84.2 2e-11 >seq26 Length=11430413 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||||| || | || || || || || || ||||| ||| || ||||| | Sbjct 3031773 CGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGCCCA 3031832 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| |||||| | |||||| ||||| || |||||||||||| Sbjct 3031833 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGCGGAATGCCCTCCTTG 3031892 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | |||| ||| || | ||| || || | ||| | Sbjct 3031893 TCCTGGATCTTGGCCTTGACATTCTCGATGGTATCACTGGGCTCAACCTCTAGGGTGATG 3031952 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || || || ||||| || || ||||| ||||||||| Sbjct 3031953 GTCTTCCCTGTCAGGGTCTTCACAAAGATCTGCATG 3031988 >seq220 Length=9331205 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||| | ||| | || || || || || || ||||| || || ||||| Sbjct 1328907 CGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCG 1328966 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || |||||| |||||| | |||||| || || || || ||||||||| Sbjct 1328967 TCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATACCCTCCTTG 1329026 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||| | | || | || || | |||||| |||| ||| | Sbjct 1329027 TCCTGGATCTTGGCCTTCACGTTCTCAATAGTATCACTGGGCTCGACCTCGAGGGTGATG 1329086 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || ||||| ||||| || || ||||| ||||||||| Sbjct 1329087 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 1329122 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||| | ||| | || || || || || || ||||| || || | ||| | Sbjct 1327767 CGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGAGCGCCCA 1327826 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| |||||| | |||||| || || || |||||||||||| Sbjct 1327827 TCTTCCAGCTGCTTCTCAGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTG 1327886 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| | ||| | | || | |||||| | |||||| |||| ||| | Sbjct 1327887 TCCTGGATCTGGGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATG 1327946 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| ||||| || || ||| | |||||||| Sbjct 1327947 GTCTTGCCAGTCAGGGTCTTCACACAGATCTGCAT 1327981 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||| | ||| | || || || || || || ||||| || || | ||| | Sbjct 1327995 CGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGAGCGCCCA 1328054 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| |||||| | |||||| || || || |||||||||||| Sbjct 1328055 TCTTCCAGCTGCTTCTCAGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTG 1328114 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| | ||| | | || | |||||| | |||||| |||| ||| | Sbjct 1328115 TCCTGGATCTGGGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATG 1328174 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| ||||| || || ||| | |||||||| Sbjct 1328175 GTCTTGCCAGTCAGGGTCTTCACACAGATCTGCAT 1328209 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||| | ||| | || || || || || || ||||| || || | ||| | Sbjct 1328223 CGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGAGCGCCCA 1328282 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| |||||| | |||||| || || || |||||||||||| Sbjct 1328283 TCTTCCAGCTGCTTCTCAGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTG 1328342 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||| | | || | |||||| | || || |||| ||| | Sbjct 1328343 TCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTTGGTTCCACCTCGAGGGTGATG 1328402 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| ||||| || || ||||| |||||||| Sbjct 1328403 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1328437 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||| | ||| | || ||||| || || || ||||| || || ||||| Sbjct 1328451 CGCAGCACAAGATGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCG 1328510 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| ||||||| | |||||| || || || |||||||||||| Sbjct 1328511 TCTTCCAGCTGCTTCCCAGCAAAGATCAACCCCTGCTGGTCAGGGGGGATGCCCTCCTTG 1328570 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||| | | || | || || | ||| || || | ||| | Sbjct 1328571 TCCTGGATCTTGGCCTTCACATTCTCAATAGTATCGCTGGGCTCAACCTCAAGGGTGATG 1328630 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| ||||| || || ||||| |||||||| Sbjct 1328631 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1328665 >seq29 Length=10060041 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 126911 TGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGT 126970 ||| || || | |||||||||||||||| ||| || |||||| ||| |||||||| Sbjct 2914711 TGTTTCCTACTCACTTTTTGAATATTGTAGTCGGACAGCGTGCGTCCATCTTCTAGCTGC 2914652 Query 126971 TTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCC 127011 || ||||| | |||| ||||||||| || ||||| ||||| Sbjct 2914651 TTACCAGCAAAAATCAGTCGCTGCTGGTCAGGAGGAATGCC 2914611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475478493068720