Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq19 149 9e-31 seq89 116 5e-21 >seq19 Length=5382850 Score = 149 bits (164), Expect = 9e-31 Identities = 178/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786 || || | |||||| || |||| |||||| ||| |||| || || || || ||||| || Sbjct 2220604 ATGAGTCTAGTGGTCTGGAACAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAGG 2220663 Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846 | || ||||||| ||||||||| ||||||||||| ||||| |||||||| || || || Sbjct 2220664 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATTGTGGCATACATCATCAAGCCTGGG 2220723 Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906 || ||||||||||| || | ||| || | ||| ||| | || || || | || | Sbjct 2220724 ACCAAACCAAACACCTCCTGCCCGACAGAAAACTGCAAGTGTTCAGGTACGTGAGGAGGG 2220783 Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACC 9966 || | ||| | |||| || || || || || || ||||||||||| || ||||| | | Sbjct 2220784 TAGATCATTTCTGCCTGAGTGTCCTTCACCGTTGGTGGATACATTTCTCCATCAATCATC 2220843 Query 9967 TG 9968 || Sbjct 2220844 TG 2220845 Score = 141 bits (156), Expect = 1e-28 Identities = 209/296 (71%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| || | || ||||| || ||||||||| || ||||| ||| | || || | Sbjct 2218286 GGAAAGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 2218345 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || | || || || || || | || ||||||||||| || ||||||||| | |||| Sbjct 2218346 TATTGATTATTTCAAAGCCCACTTTTCCACCGAAGGTGCTAGGCTTCCAGTACTCAGGGG 2218405 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 ||||||| | || |||| || ||||||| || ||||| || || | ||| | || Sbjct 2218406 AGCAGATAGCATTTCCCATCAGTCCTTTCAGCGAGAACGGTGCTCCAATCTCCACCATCG 2218465 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | ||||| ||||||||||| || || || ||||| || | | ||| | ||| || || | Sbjct 2218466 TTTCACCAAAGATGGCACCTGGTCGTGGCTTTTCTACCAGAAGGCCTGGGTACAGCTCCA 2218525 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || || | ||| ||||| || |||||| ||| || || || || || || ||| Sbjct 2218526 TGGCATCAATGTCTCCATAAAGCTCTTCCAGCTCAGCTGCCATTTCTTTTTCTCCT 2218581 Score = 93.3 bits (102), Expect = 6e-14 Identities = 105/139 (76%), Gaps = 4/139 (3%) Strand=Plus/Plus Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 ||||||| || | ||||||| ||||||| || ||||| || || || |||||||||||| Sbjct 2219148 TCAGGCAGAAGCGGATGCCAGTGGTAGAGAGTGTTGAATTCAGCTGCAATTCGGTTCTGG 2219207 Query 9613 TACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 |||||||| | ||| |||||| | ||| || ||||| | || | ||||||||| | Sbjct 2219208 TACTGAAATCGCTGGT--TGAACAGCAGCTCAGGATCAAACTTGAGTTTGAAGTGGTAGC 2219265 Query 9671 CGCTGAGTTGCTGGACATA 9689 | || | || || ||||| Sbjct 2219266 CACTCAAGTGTTGTACATA 2219284 >seq89 Length=7060200 Score = 116 bits (128), Expect = 5e-21 Identities = 172/244 (70%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 8935 TGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGC 8994 ||| || || ||||| || || || |||||||||||||| ||||||||||||||| | Sbjct 5100510 TGCTGTCTTAACGATCTCAAAGCCAGTCTCCCCGCCGAAGGTACTGGGTTTCCAGTACTC 5100451 Query 8995 CGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGAT 9054 |||||||||| | ||| | | ||||| |||| |||||| ||||| || | ||| | Sbjct 5100450 TGGGGAGCAGACGGGGTTTCCAAAAAGCCCCTTCAGGGAAAAGGGAGCTCCAATCTCCAC 5100391 Query 9055 GATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAG 9114 ||||| || || || || || ||| | ||||| || | | ||||| | || | Sbjct 5100390 CATGCTTTCCCCAAAAATACCATTGGGTTGAGGTTTCTCAAGCAGCAAGCCCGGATAAAA 5100331 Query 9115 TTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACC 9174 || | ||| || | ||| ||||| || | |||| ||| || || |||| | ||| || Sbjct 5100330 CTCCAGAGCATCAATGTCTCCATACAGCTCCTCCAGCTCTGCCGCCTTCTCTTCCTCTCC 5100271 Query 9175 TACA 9178 | || Sbjct 5100270 TGCA 5100267 Score = 89.7 bits (98), Expect = 7e-13 Identities = 161/234 (69%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 9489 GAGGATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCT---ATGCG 9545 ||| ||||| ||||||| | ||| || ||||| | |||| |||| || ||| Sbjct 5098959 GAGCATGGAGGTGTTGTAGAGGAACTGCTCGTAGCTGTACT---CGTCCCCCTGGATGAT 5098903 Query 9546 AAAATCATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCG 9605 || || |||| ||| |||||| | ||||| |||||||| |||| || || Sbjct 5098902 GAAGGAGTCGGGCATCAGCCCGTGCCAGTGATAGAGCTGGTTGAACTCCACCGCGATGCG 5098843 Query 9606 GTTCTGGTACTGAAAGGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTG 9665 ||| ||||||| || || || ||||| | ||| |||||||| | || | || Sbjct 5098842 ATTCCGGTACTGGAACTGTGTCCCAAACAGCAGCTCGGGGTCAAACTTGAGGCTCAGGTA 5098783 Query 9666 GTACCCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 |||||||||||| ||||||||||| | | || | || |||||||| ||||| Sbjct 5098782 GTACCCGCTGAGGTGCTGGACATAGTCTTCAATGACGATCTTAATGGTCTCCCC 5098729 Score = 87.8 bits (96), Expect = 3e-12 Identities = 171/253 (68%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 9715 TCCCCGGTAATGATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGT 9774 || ||| | | ||| ||||||| || || || | ||||||||| | ||| || || Sbjct 5098211 TCACCGATGAGGATGAGACGAGCTGTCTGGAAGAGCTGCTCGTCGCTCCAGGTGGGATGC 5098152 Query 9775 TCGTGTTTGAGAACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATC 9834 || ||||| || | |||||||||| |||||| || | |||||| | ||||||||||| Sbjct 5098151 TCCTGTTTCAGGATGTCGCAGACCCGGTTGTGCTCGCGCAGCCAGAGCGTGGCGTACATG 5098092 Query 9835 ATTAAACCCGGCACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGC 9894 | ||||||| | |||||||| || | ||||| || | || || | ||| Sbjct 5098091 CAGAGCCCCGGCAGCAGCCCAAACACCTCCTGCCCCATCGCCAGCTGCTTCTCCTTGGGG 5098032 Query 9895 ACTTCGGGCGCATACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCA 9954 || | |||| || | ||| || ||| | | | |||| ||||||| |||| || Sbjct 5098031 ACGGCAGGCGGGTAGACCATGTGAACCGGAGCATGGGTGACCATGGGGGGGTACACCTCT 5097972 Query 9955 CCGTCAATAACCT 9967 || || | |||| Sbjct 5097971 CCATCCACCACCT 5097959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723694048110200