Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq230 120 5e-22 >seq230 Length=477728 Score = 120 bits (132), Expect = 5e-22 Identities = 120/153 (78%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 203910 CCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGT 203969 ||| || ||| ||||| | ||||||| | ||||||| |||||| || || |||| Sbjct 329508 CCTGCTTCCAGCCGTAGAAGTGCATGCTGGTGAGTTTGCCGTAGTTGGGCTCCGCGATGT 329567 Query 203970 GAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATA 204028 | ||||| ||||||||||| |||||||||||| ||||| | || || ||||| |||| Sbjct 329568 GGATGTTGAGAGACTGGCTCTGGTCGATGAAA-GCGCCTCTGTCCGCTGCCATCTTGAGG 329626 Query 204029 ATGGTCTTCTGCGAAATCTCCCACACCGTCTTG 204061 | |||||||| || |||||||||||||||||| Sbjct 329627 ACAGTCTTCTGGGAGATCTCCCACACCGTCTTG 329659 Score = 86.0 bits (94), Expect = 1e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 204196 CTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGC 204255 ||| || ||||| || || |||| |||||| | | ||| ||||| | || |||| | Sbjct 333710 CTGGAACTCTCCTGAGAGGACCCTGCGGGTGTAGATGTTACTGGTGTAGGGCTCGATGGA 333769 Query 204256 CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGA 204315 ||||||||||| || ||||| ||||| || || |||||||||| ||||||||| Sbjct 333770 TTCGTTGTTGCCCAAGATCTGGGCGGTAGAAGCTGTTGGCATGGGAGAGAGGAGCAGGCT 333829 Query 204316 GTTGCGCACACCGTA 204330 ||| | |||||||| Sbjct 333830 GTTTCTGACACCGTA 333844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795117897281680