Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq26 149 7e-31 seq220 138 1e-27 >seq26 Length=11430413 Score = 149 bits (164), Expect = 7e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 46364 TTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCG 46423 || || ||||| | ||||| ||| ||||||| || |||||| ||||| ||||||||| Sbjct 3031302 TTACCCCCTCTCAGACGCAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCG 3031361 Query 46424 GATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCC 46483 || | |||||| |||| || ||||||||||| || || |||| | ||||||||||| Sbjct 3031362 GACAAGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGT 3031421 Query 46484 GGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCC 46543 || | || ||||||||| |||||| ||||| || | | ||||| || | || Sbjct 3031422 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCA 3031481 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| |||||||| || || ||||| || || || ||||| ||||| Sbjct 3031482 ACCTCCAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACGAAGATCTGCAT 3031531 Score = 149 bits (164), Expect = 7e-31 Identities = 172/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| ||||| | ||||| ||||| |||| || ||||| ||||| |||||||||| Sbjct 3031987 TGCCACCTCTCAGACGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGG 3032046 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | | |||||| |||| || ||||||||||| || || |||| | ||||||||||| | Sbjct 3032047 ACAAGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGTG 3032106 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||||||| |||||| ||||| || | | ||||| || | || | Sbjct 3032107 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAA 3032166 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 | |||| |||||||| || || ||||| || || || ||||| |||||||| Sbjct 3032167 CCTCCAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACGAAGATCTGCATTTT 3032218 Score = 147 bits (162), Expect = 2e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| ||||| | ||||| ||| ||||||| || |||||| ||||| |||||||| | Sbjct 3031531 TGCCACCTCTCAGACGCAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTG 3031590 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || |||||| |||| || ||||||||||| || || |||| | |||||| || | | Sbjct 3031591 AGAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGAG 3031650 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||||||| |||||| ||||| || | | ||||| || | || | Sbjct 3031651 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAA 3031710 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| |||||||| ||||| ||||| || || || ||||| ||||| Sbjct 3031711 CCTCCAGAGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 3031759 Score = 143 bits (158), Expect = 3e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| ||||| | ||||| ||||| |||| || ||||| ||||| |||||||||| Sbjct 3031759 TGCCACCTCTCAGACGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGG 3031818 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | | |||||| | || || ||||||||||| || || |||| | ||||||||||| || Sbjct 3031819 ACAAGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGCG 3031878 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || |||||||||| |||||| ||||| || | | || || || | || | Sbjct 3031879 GAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTATCACTGGGCTCAA 3031938 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | |||||||| || || ||||| || || |||||||| ||||| Sbjct 3031939 CCTCTAGGGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAGATCTGCAT 3031987 >seq220 Length=9331205 Score = 138 bits (152), Expect = 1e-27 Identities = 171/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | ||||| ||| ||||| | || ||||| ||||| |||||||| || Sbjct 1328895 CCGCCTCTGAGACGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 1328954 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || |||||| |||| || ||||||||||| ||||| |||| | ||||||||| | || Sbjct 1328955 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCTGGGGGG 1329014 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | |||||||||| |||||| ||| | || | | || || || | || || Sbjct 1329015 ATACCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATAGTATCACTGGGCTCGACC 1329074 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGCAC 46600 || | |||||||| ||||| ||||| || || |||||||| ||||| ||| || Sbjct 1329075 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTTGAAC 1329128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565211883253560