Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq26 156 4e-33 seq220 152 5e-32 seq307 91.5 1e-13 >seq26 Length=11430413 Score = 156 bits (172), Expect = 4e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || ||||| || || || || || || |||||||| | || || ||| || Sbjct 3032218 AAAATGCAGATCTTCGTGAAGACCCTGACAGGGAAGACCATCACTCTGGAGGTTGAGCCC 3032159 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | || |||| ||||| || || ||||| ||||| Sbjct 3032158 AGTGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCACCCGAC 3032099 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| |||| || | || ||||| |||||||| |||| ||||||| | ||||||| Sbjct 3032098 CAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCTTGTCCGACTAC 3032039 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||| |||||| | || ||||| |||||||||||| ||||||| ||| Sbjct 3032038 AACATCCAGAAGGAATCCACCCTGCACTTGGTGCTGCGTCTGAGAGGTGGC 3031988 Score = 145 bits (160), Expect = 8e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || || || ||||||||| | || || ||| ||| Sbjct 3031987 ATGCAGATCTTTGTGAAGACCCTGACAGGGAAGACCATCACCCTAGAGGTTGAGCCCAGT 3031928 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || | || |||| ||||| ||||| ||||| ||||||| Sbjct 3031927 GATACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCCGACCAG 3031868 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| |||||||| || | ||||||| | |||||||||| Sbjct 3031867 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCTTGTCCGACTACAAC 3031808 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| |||||| | || ||||| |||||||||||| ||||||| ||| Sbjct 3031807 ATCCAGAAGGAATCCACCCTGCACTTGGTGCTGCGTCTGAGAGGTGGC 3031760 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| |||||||| | || || ||| ||| Sbjct 3031759 ATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACTCTGGAGGTTGAGCCCAGT 3031700 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| || || ||||| | || || Sbjct 3031699 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCAGATCAG 3031640 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| |||||||| |||| |||||||||| ||||||||| Sbjct 3031639 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCAGACTACAAC 3031580 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| | || |||||| | ||||||||| ||||||| ||| Sbjct 3031579 ATCCAGAAGGAGTCCACCCTGCATCTTGTGCTGCGTCTGAGAGGTGGC 3031532 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || || || |||||||| | || || ||| ||| Sbjct 3031531 ATGCAGATCTTCGTGAAGACCCTGACAGGGAAGACCATCACTCTGGAGGTTGAGCCCAGT 3031472 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| || || ||||| ||||||| Sbjct 3031471 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCACCCGACCAG 3031412 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| |||||||| |||| ||||||| | |||||||||| Sbjct 3031411 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCTTGTCCGACTACAAC 3031352 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| | || |||||| | ||||||||| ||||||| || Sbjct 3031351 ATCCAGAAGGAGTCCACCCTGCATCTTGTGCTGCGTCTGAGAGGGGG 3031305 >seq220 Length=9331205 Score = 152 bits (168), Expect = 5e-32 Identities = 174/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || || || || || ||||| ||||||||| |||| |||||| || Sbjct 1329124 AACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCC 1329065 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | || | | | |||| | || | || |||| ||||| ||||| || ||| | || Sbjct 1329064 AGTGATACTATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCAGA 1329006 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||| |||| || | ||| ||||| |||||||| |||| ||||||||| ||||| Sbjct 1329005 CCAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTA 1328946 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| |||||| | || || ||| | ||||||||| | |||||||| Sbjct 1328945 CAACATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGTCTCAGAGGCGG 1328895 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| |||| |||||| ||| Sbjct 1328893 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 1328834 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| || || || || || ||| | ||||| Sbjct 1328833 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCTGACCA 1328775 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | ||| || || |||||||| || | ||||||||| |||||||| Sbjct 1328774 GCAGAGGCTGATCTTCGCTGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 1328715 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| |||||| | || |||||| | |||||||| |||| || || Sbjct 1328714 CATCCAGAAGGAATCCACTCTGCATCTTGTGCTGCGCCTGAGGGGTGG 1328667 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || | || || || || || ||||| ||||||||| |||| |||||| ||| Sbjct 1327981 ATGCAGATCTGTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 1327922 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | | |||| ||||| ||||| || ||| | ||||| Sbjct 1327921 GACACCATTGAGAATGTGAAGGCCCAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 1327862 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | ||| | || |||||||| || | |||| |||| ||||||||| Sbjct 1327861 CAGAGGCTGATCTTCGCTGAGAAGCAGCTGGAAGATGGGCGCTCCCTGTCTGACTACAAC 1327802 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| |||||| | || || ||| | |||||||| |||| || ||| Sbjct 1327801 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGGGGTGGC 1327754 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || | || || || || || ||||| ||||||||| |||| |||||| ||| Sbjct 1328209 ATGCAGATCTGTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 1328150 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | | |||| ||||| ||||| || ||| | ||||| Sbjct 1328149 GACACCATTGAGAATGTGAAGGCCCAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 1328090 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | ||| | || |||||||| || | |||| |||| ||||||||| Sbjct 1328089 CAGAGGCTGATCTTCGCTGAGAAGCAGCTGGAAGATGGGCGCTCCCTGTCTGACTACAAC 1328030 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| |||||| | || || ||| | |||||||| |||| || || Sbjct 1328029 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGGGGTGG 1327983 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| | || || ||| ||| | Sbjct 1328665 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGC 1328606 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | || | || |||| ||||| ||||| || ||| | ||||| Sbjct 1328605 GATACTATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 1328546 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | || || || |||||||| |||| ||||||||| ||||||||| Sbjct 1328545 CAGGGGTTGATCTTTGCTGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAAC 1328486 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| | || |||||| | |||||||| |||| || || Sbjct 1328485 ATCCAGAAGGAGTCCACTCTGCATCTTGTGCTGCGCCTGAGGGGTGG 1328439 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| |||| || || | | Sbjct 1328437 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTGGAACCAAGT 1328378 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| ||||| || ||| | ||||| Sbjct 1328377 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 1328318 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | ||| | || |||||||| || | |||| |||| ||||||||| Sbjct 1328317 CAGAGGCTGATCTTCGCTGAGAAGCAGCTGGAAGATGGGCGCTCCCTGTCTGACTACAAC 1328258 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| |||||| | || || ||| | |||||||| |||| || || Sbjct 1328257 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGGGGTGG 1328211 >seq307 Length=12913425 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 133395 CACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGA 133454 |||||| || | ||||| || || |||||||| || |||||||| ||| ||||| Sbjct 4483917 CACCTCTTCCGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTG 4483858 Query 133455 ATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTCC 133509 || || ||||| || || || |||||||||||||| || |||| |||||||||| Sbjct 4483857 GTACTGGATGGGGAAGATGACGAACCGGCGGGGGTTCTCCCGCAGCAGCGGCTCC 4483803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500149335643520