Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq66 111 1e-18 seq559 87.8 1e-11 >seq66 Length=2448537 Score = 111 bits (122), Expect = 1e-18 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || || ||||| || | |||||||||||||| || ||||||||||||| ||| Sbjct 2003070 TTTTTGTCCAGCCCATAGGCTATGGCAGCAGCAGTTGGCTCGTTAATAATTCTCAGGACA 2003129 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || || ||||| |||| |||||||| || || || | || || ||||| ||||| Sbjct 2003130 TTGAGCCCTGCAATGGTTCCAGCATCTTTTGTAGCCTGACGCTGAGAGTCGTTGAAATAG 2003189 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTAC 518313 || || ||||| | || |||| ||| || Sbjct 2003190 GCTGGTACAGTCACTACAGCATTAGTAAC 2003218 >seq559 Length=761423 Score = 87.8 bits (96), Expect = 1e-11 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 366993 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 367052 ||| || || ||| | ||||| || ||||| || |||||| | ||| | | | ||||| Sbjct 678471 TGTTGTGGCTACAGTGGCATTCGGAATGGGCATCAATAAAGCAGATATCCGGTTGGTTAT 678412 Query 367053 TCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 367112 |||||| || || || ||| | || ||| ||||||||||||||||| || || ||||| Sbjct 678411 TCATTACGGTGCCCCTAAGGAAATGGAATCCTATTATCAAGAAATTGGGAGGGCTGGTCG 678352 Query 367113 TGATGG 367118 ||||| Sbjct 678351 CGATGG 678346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780636163777618