Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq173 298 7e-76 seq66 178 2e-39 >seq173 Length=3317996 Score = 298 bits (330), Expect = 7e-76 Identities = 1040/1602 (65%), Gaps = 42/1602 (3%) Strand=Plus/Minus Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 |||||| || |||| || || || || ||||| ||||| || ||||| || || | Sbjct 1173345 TTCATCCTCTGCTTTGTATTTCTCTGCTTCTTGCACCATACGGTCGATGTCATCCTT-GC 1173287 Query 6628 TAAT-CTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTT 6686 ||| | || || ||||| || || || ||||| | ||||||| | ||| || Sbjct 1173286 TAAGGCGACCTTTGTCATTGGTGATGGTGATCTTGTTCTCCTTACCCGTGCTCTTGTCCA 1173227 Query 6687 CAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTG 6746 | || || || |||| ||||| || ||||| | || || | || | ||| || || Sbjct 1173226 CGGCGCTGACGTTCAGGATACCGTTGGCATCGATGTCAAAAGTAACCTCAATCTGGGGG- 1173168 Query 6747 TACCCCTCGGTGCGGCTGGA---ATACCCGTTAAATCAAATGTACCAAGTAAACTGTTAT 6803 || || ||| | ||| ||| || ||||||| ||||| | || || || |||| | Sbjct 1173167 -ACTCCACGGGG-GGCCGGAGGGATGCCCGTTAGGTCAAACTTGCCCAGCAAGTTGTTGT 1173110 Query 6804 CCGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATT--GTCACCGCAGGTTGATTATC 6861 || ||| | | | |||||||| || || | | | | ||| || || || || Sbjct 1173109 CCTTCGTCATGGCCCTCTCACCTTCGTACACCTGGACTAGGACACTGCTC--TGGTTGTC 1173052 Query 6862 TTGTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAAC 6921 | || | |||| | || || || | || || || || || | | || | Sbjct 1173051 TGAGTAGGTGGTGAAGGTCTGAGTTTGTTTGGTGGGGATGGTGGTGTTGCGCTTGATGAG 1172992 Query 6922 CGGGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAG 6981 | |||||| | ||||| || |||| || || |||||||| || || ||||| || Sbjct 1172991 AGCGGTCATCACCCCACCAGCTGTCTCGATGCCCAGGGACAGAGGGGTGACATCCAACAG 1172932 Query 6982 TAACAGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGC 7041 | ||| || || ||| || | || ||| | | ||| || ||||| || | || Sbjct 1172931 CAGCAGATCCTGCACATTCTCAGACTTGTCTCCCATGAGGATAGCTGCTTGCACAGCAGC 1172872 Query 7042 CCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATA 7101 ||| || || || |||||||||||||| || | || || || ||||| || || || | Sbjct 1172871 CCCATAAGCAACAGCCTCATCGGGGTTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAA 1172812 Query 7102 ATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTC 7161 ||| || | | ||| || || ||||| || || || ||||| |||| ||||| || Sbjct 1172811 GTCCTGTAGGAGCTTTTGGATCTTGGGGATACGAGTGGAGCCACCCACCAGCACGATCTC 1172752 Query 7162 ATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACA 7221 | | | || || | ||| | || || || | || || || || |||| Sbjct 1172751 CTGGATCTGGCCCTTGTCTAGCTTGGCATCACGCAGAGCCTTCTCCACCGGCTCCAGTGT 1172692 Query 7222 TTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAA 7281 |||||| | || | || ||||| || || ||||| |||||||| || ||||| Sbjct 1172691 GCCACGGAAGAGATCGGCATTGAGCTCCTCGAAGCGGGCACGAGTAATGGAGGTGTAGAA 1172632 Query 7282 ATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGAT---AA 7338 |||| ||| || || | || || || |||||| | | ||||| | ||||| | Sbjct 1172631 GTCAATGCCCTCATAGAGGGAGTCGATCTCAATGCTAGCTTGTG---TGGAAGAGCTGAG 1172575 Query 7339 CGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGA 7398 || ||||| || | |||||| ||||| || | || | | || ||| ||| || | Sbjct 1172574 GGTGCGCTTCGCCCTCTCACAAGCCGTACGCAGCCGCCTCACCGCCCGCTTGTTGCCAGC 1172515 Query 7399 AATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATC 7458 ||| || ||| || ||||| || |||||||| ||| || | | | || Sbjct 1172514 AATGTCGCGCTTGTGCTTACGCTTGAACTCTTCCACGAAATGGTTCACCATGCGGTTGTC 1172455 Query 7459 GAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCC 7518 || || || ||||||| || || || || || || | || || |||||||| || | Sbjct 1172454 AAAGTCCTCCCCACCCAGATGGGTGTCTCCAGCTGTGGACTTCACCTCAAAGATGCCATC 1172395 Query 7519 TTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT 7578 |||||| | | | || |||||||| || || || |||| |||||| ||||| ||||| Sbjct 1172394 CTCAATGGTCAGGATAGACACATCAAAAGTGCCCCCTCCCAAGTCAAAGATGAGCACGTT 1172335 Query 7579 CGTATCGTC-GTCTTTGT-----TCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGG 7632 | | || | | | || |||| || | || || || ||||| || || || || Sbjct 1172334 CTTCTCCCCAGCCCGCGTACCTTTCTTGTCCAAGCCATAGGCTATAGCAGCTGCTGTGGG 1172275 Query 7633 TTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTG 7692 ||||| |||||||| | ||| ||||||| || || | |||||||| || || || Sbjct 1172274 CTCATTGATAATACGCATCACGTTAAGGCCAGTGATGGTGCCAGCATCTTTGGTGGCCTG 1172215 Query 7693 TCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACC 7752 || || || || || ||||| || || ||||| | ||| || | | || || || Sbjct 1172214 GCGCTGGGAGTCATTGAAGTAAGCAGGCACCGTGATGACAGCATTCTGTACCTTGCGCCC 1172155 Query 7753 GAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGC 7812 || || | || || || || ||||| |||||||| ||||| || ||||| || | Sbjct 1172154 CAGGTAGGCCTCAGCAATCTCCTTCATCTTGGTAAGGACCATGGAGCTGATCTCCTCGGG 1172095 Query 7813 CGCAAACTGT-TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCAC 7871 | | | || ||| | || || || | || |||| | | |||| || || ||| Sbjct 1172094 -GAAGAAGGTCTTCATCTCGCCCTTGTACTCCACTTGCACCTTGGGCTT----GC--CAC 1172042 Query 7872 CGGGGATAACCTTAT---ACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAA 7928 | | ||| | | | ||| | ||||| ||| || ||| || || || | Sbjct 1172041 CCTCATTCACCACACGGAAGGGCCAGTGCTTCATGTCGGACTGCACC-GTGGGATCGTCA 1171983 Query 7929 -ACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTT 7987 |||| | ||||| || ||||| ||||| || | ||||| ||||||||||||| Sbjct 1171982 TACTTGCGGCCGATGAGGCGCTTGGCATCGAAGATGGTGTTGGTGGGGTTCATGGCCACC 1171923 Query 7988 TGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGAT 8047 |||||||| || || |||||||| || || || || || || || || ||||| | | Sbjct 1171922 TGGTTCTTGGCGGCATCCCCGATGAGGCGCTCTGTA---TCGGTGAAGGCCACGTA-GCT 1171867 Query 8048 GGG-GTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGAC 8106 ||| || || || || || |||||||| || || || || || | | | || |||| Sbjct 1171866 GGGCGTGGTACGGTTGCCCTGGTCGTTGGCGATGATCTCCACTTTGCCATGCTGGAAGAC 1171807 Query 8107 GCCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 ||| ||||| || ||||| || || | || || |||||||| Sbjct 1171806 GCCCACGCAGGAGTACGTGGTGCCCAGGTCGATGCCGATTGC 1171765 >seq66 Length=2448537 Score = 178 bits (196), Expect = 2e-39 Identities = 367/543 (68%), Gaps = 6/543 (1%) Strand=Plus/Plus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || || || || || ||||| || ||||| || | || ||||| ||||| || || || Sbjct 2002415 GCACCATAAGCCACAGCCTCGTCAGGGTTGATGCTCTTGTTCAGCTCTTTGCCATTGAAG 2002474 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 ||||| | | | ||||| || ||||| || || || |||||||||| ||||| Sbjct 2002475 AAATCCTGCAGGAGCTTCTGAATCTTTGGGATACGGGTGGACCCACCGACCAGCACGATG 2002534 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 || | | | ||| || |||| ||| | || || || | || || ||||| |||| Sbjct 2002535 TCGTGGATCTGCGACTTGTCGAGCTTGGCATCCCGCAGGGCCTTCTCCACAGGATCCAGG 2002594 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 |||||| | ||| ||| || ||||| || || | ||| ||||| || ||| Sbjct 2002595 GTGCCACGGAAGAGGTCGGCGTTCAGCTCTTCAAAGCGAGCTCTGGTGATGGACGTGTAG 2002654 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 || || | || || || | ||||||||||| ||| | | || | | || || | | Sbjct 2002655 AAGTCGATCCCCTCATAGAGAGAATCAATTTCGATGCTGGCCTGGGTGCTGGACGACAGC 2002714 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || ||||| || ||||| |||||||| || | ||||| | || | | ||| | Sbjct 2002715 GTACGCTTGGCACGCTCGCACGCCGTGCGGAGGCGACGCACCGCCCTCTTGTTCTCACTG 2002774 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTG-TCGA--AGGAGTCTCGAA 7456 || || ||||| || || || || || || || |||||| | || | | | | Sbjct 2002775 ATGTCCTTCTTGTGCTTGCGCTTGAATTCAGCAATGAAGTGGTTGACCATGCGGTTG--- 2002831 Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| ||||||||||||||||| || || || ||||| | ||| || |||||||| || Sbjct 2002832 TCGAAGTCTTCACCACCCAAGTGAGTGTCACCTGCGGTGGATTTCACCTCAAAGATGCCA 2002891 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 ||||||| | | | || |||||||| || ||||| || || || || || || ||| Sbjct 2002892 TCTTCAATTGTCAGAATTGACACATCAAAGGTGCCACCTCCAAGATCGAAGATAAGAACG 2002951 Query 7577 TTC 7579 ||| Sbjct 2002952 TTC 2002954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635103004332520