Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq230 91.5 2e-13 >seq230 Length=477728 Score = 91.5 bits (100), Expect = 2e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 112278 TGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGAC 112337 ||| | || || || |||| || || ||||| || || || || ||||| ||||||||| Sbjct 343128 TGGTACGCCATCATCGAGTCGCAGACGGAGACCGGCACGCCCTACATGCTCTACAAAGAC 343069 Query 112338 GCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGT 112397 |||| |||| |||||| || || |||| ||||| ||||| | |||||| ||| Sbjct 343068 TCCTGCAACCGAAAGAGCAACCAGCAGAACTTGGGGACCATCAAATGCAGCAACCTGTGT 343009 Query 112398 ACAGAAATCTTGGAATTTACAGACAAAGATGAG 112430 |||||||| |||| | || |||||||||| Sbjct 343008 ACAGAAATAGTGGAGTACACCAGCAAAGATGAG 342976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620713279422160