Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq230 118 1e-21 seq3752 82.4 9e-11 >seq230 Length=477728 Score = 118 bits (130), Expect = 1e-21 Identities = 118/153 (77%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 |||||| || |||||||| | ||||||||||||| |||| | || || ||||| Sbjct 342976 CTCATCTTTGCTGGTGTACTCCACTATTTCTGTACACAGGTTGCTGCATTTGATGGTCCC 343035 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 ||| |||| ||||| |||||| |||||| | || |||||||||||||||||||| || Sbjct 343036 CAAGTTCTGCTGGTTGCTCTTTCGGTTGCAGGAGTCTTTGTAGAGCATGTAGGGCGTGCC 343095 Query 106612 CGTCTCCGTCTGTGACTTGAGAATTGCCTTCCA 106644 ||||||||||| |||| || || || | ||| Sbjct 343096 GGTCTCCGTCTGCGACTCGATGATGGCGTACCA 343128 >seq3752 Length=30765690 Score = 82.4 bits (90), Expect = 9e-11 Identities = 94/124 (76%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 117293 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCT 117352 ||||||||| | |||||||||||| ||||| || || ||||| || |||| ||||| Sbjct 11115985 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTGAGTCCAGGCATCAGGCCCCTCTTCT 11116044 Query 117353 TCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 ||| |||| | ||||| ||| || || || || |||||||| || || || ||||| Sbjct 11116045 TCAGCCAAAATATAGCAGCA-AAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAG 11116103 Query 117412 GCAA 117415 |||| Sbjct 11116104 GCAA 11116107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589953122525720