Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq26 132 1e-25 seq220 122 2e-22 seq29 93.3 9e-14 >seq26 Length=11430413 Score = 132 bits (146), Expect = 1e-25 Identities = 165/225 (73%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | || ||||| || || |||||||| || || || ||||| || | || || Sbjct 3031538 TCTCAGACGCAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGGGT 3031597 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||| ||||| |||||||| || || ||||| || | || || |||||||||||||| Sbjct 3031598 GCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGAATGCC 3031657 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 ||| ||||| || || || |||||| |||||||||||||| ||| || || || Sbjct 3031658 TTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCAACCTC 3031714 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| ||||||| || || ||||| | ||||| Sbjct 3031715 CAGAGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 3031759 Score = 131 bits (144), Expect = 4e-25 Identities = 167/226 (74%), Gaps = 8/226 (4%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAG 194977 ||| || | || ||||| || || |||||||| || || || ||||| |||| |||| | Sbjct 3031310 TCTCAGACGCAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAAG-G 3031368 Query 194978 TTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGC 195037 | | ||| ||||| |||||||| || || ||||| || | || ||||| || ||||||| Sbjct 3031369 TGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGTGGAATGC 3031428 Query 195038 CTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTT 195094 |||| ||||| || || || |||||| |||||||||||||| ||| || || | Sbjct 3031429 CTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCAACCT 3031485 Query 195095 CAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || | ||||| ||||||| || || ||||| | ||||| Sbjct 3031486 CCAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACGAAGATCTGCAT 3031531 Score = 125 bits (138), Expect = 2e-23 Identities = 167/228 (73%), Gaps = 8/228 (4%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAG 194977 ||| || | || || | ||| || ||||| || || || || ||||| |||| |||| | Sbjct 3031994 TCTCAGACGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAG-G 3032052 Query 194978 TTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGC 195037 | | ||| ||||| |||||||| || || ||||| || | || ||||| || ||||||| Sbjct 3032053 TGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGTGGAATGC 3032112 Query 195038 CTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTT 195094 |||| ||||| || || || |||||| |||||||||||||| ||| || || | Sbjct 3032113 CTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCAACCT 3032169 Query 195095 CAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 | || || | ||||| ||||||| || || ||||| | ||||||| Sbjct 3032170 CCAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACGAAGATCTGCATTT 3032217 >seq220 Length=9331205 Score = 122 bits (134), Expect = 2e-22 Identities = 155/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || |||||||| || || || || ||||| || | || || | ||||||||| Sbjct 1328685 ACAAGATGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 1328744 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || | || ||||| || || |||||||| || || || Sbjct 1328745 AGCTGCTTCCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCCTGG 1328804 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| ||||||||||||||||| ||| || || || ||||| | ||| Sbjct 1328805 ATCTTGGCCTTCACGTTCTCAATGGTGTC---ACTGGGCTCGACCTCGAGGGTGATGGTC 1328861 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || || || | ||||| Sbjct 1328862 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1328893 Score = 118 bits (130), Expect = 2e-21 Identities = 154/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || ||||| || || || || ||||| || | || | | ||||||||| Sbjct 1328229 ACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGAGCGCCCATCTTCC 1328288 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| | |||||||| || | || |||||||| || ||||| || ||||| || Sbjct 1328289 AGCTGCTTCTCAGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGG 1328348 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || |||||||||||||| ||| |||||| || ||||| | ||| Sbjct 1328349 ATCTTGGCCTTCACATTCTCAATGGTGTC---ACTTGGTTCCACCTCGAGGGTGATGGTC 1328405 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || || || | ||||| Sbjct 1328406 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1328437 Score = 109 bits (120), Expect = 1e-18 Identities = 160/225 (71%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | || ||||| || || ||||| || || || || ||||| || | || || Sbjct 1328900 TCTGAGACGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGT 1328959 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||| ||||| |||||||| || |||||||| || | || |||||||| || || || Sbjct 1328960 GCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATACC 1329019 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 || ||||| || || || ||| ||||||||||| || || ||| || || || Sbjct 1329020 CTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATAGTATC---ACTGGGCTCGACCTC 1329076 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || |||| || || || || | ||||| Sbjct 1329077 GAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1329121 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || ||||||||||| || || || ||||| || | || || | ||| ||||| Sbjct 1328457 ACAAGATGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCC 1328516 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| | | || ||||| || || ||||| || ||||| || Sbjct 1328517 AGCTGCTTCCCAGCAAAGATCAACCCCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 1328576 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || |||||||| || || || || |||||||| | ||||| Sbjct 1328577 ATCTTGGCCTTCACATTCTCAATAGTATCGCTGGGCTCAACCTCAAGGGTGATGGTCTTG 1328636 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || || || | ||||| Sbjct 1328637 CCAGTCAGGGTCTTCACAAAGATCTGCAT 1328665 Score = 100 bits (110), Expect = 6e-16 Identities = 137/190 (72%), Gaps = 6/190 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || ||||| || || || || ||||| || | || | | ||||||||| Sbjct 1327773 ACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGAGCGCCCATCTTCC 1327832 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| | |||||||| || | || |||||||| || ||||| || ||||| || Sbjct 1327833 AGCTGCTTCTCAGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGG 1327892 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || | ||| || |||||||||||||| ||| || || || ||||| | ||| Sbjct 1327893 ATCTGGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCGACCTCGAGGGTGATGGTC 1327949 Query 195109 TTTCCTGTCA 195118 || || |||| Sbjct 1327950 TTGCCAGTCA 1327959 Score = 100 bits (110), Expect = 6e-16 Identities = 137/190 (72%), Gaps = 6/190 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || ||||| || || || || ||||| || | || | | ||||||||| Sbjct 1328001 ACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGAGCGCCCATCTTCC 1328060 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| | |||||||| || | || |||||||| || ||||| || ||||| || Sbjct 1328061 AGCTGCTTCTCAGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGG 1328120 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || | ||| || |||||||||||||| ||| || || || ||||| | ||| Sbjct 1328121 ATCTGGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCGACCTCGAGGGTGATGGTC 1328177 Query 195109 TTTCCTGTCA 195118 || || |||| Sbjct 1328178 TTGCCAGTCA 1328187 >seq29 Length=10060041 Score = 93.3 bits (102), Expect = 9e-14 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 194951 CTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGA 195010 |||||||||||||||| |||| || || | |||||||| ||||||||||| || || | Sbjct 2914698 CTTTTTGAATATTGTAGTCGGACAGCGTGCGTCCATCTTCTAGCTGCTTACCAGCAAAAA 2914639 Query 195011 TAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | ||||| || ||||| |||||||||||| Sbjct 2914638 TCAGTCGCTGCTGGTCAGGAGGAATGCCT 2914610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109428250230551