Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq26 123 2e-23 seq220 109 4e-19 >seq26 Length=11430413 Score = 123 bits (136), Expect = 2e-23 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || |||| | || |||||||| | ||| ||| ||||| ||||| ||||| || Sbjct 3031761 CCACCTCTCAGACGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 3031820 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | | | || |||| |||||||| || || ||||| || || | |||||||| |||| Sbjct 3031821 AAGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGCGGA 3031880 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | ||||||||||| ||||| ||||| || || || | |||| || ||||| Sbjct 3031881 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGAC--ATTCTCGATGGTATCACTGGGCTCAA 3031938 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| ||||| || || || || |||||||||||||||||||| Sbjct 3031939 CCTCTAGGGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAGATCTGCAT 3031987 Score = 104 bits (114), Expect = 2e-17 Identities = 164/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || |||| | || |||||||| | ||| ||| ||||| ||||| ||||| || Sbjct 3031989 CCACCTCTCAGACGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 3032048 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | | | || | || |||||||| || || ||||| || || | |||||||| | || Sbjct 3032049 AAGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGTGGA 3032108 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | || |||||||| ||||| ||||| || || || | |||| || ||||| Sbjct 3032109 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCAA 3032166 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATTC 34985 | || | || ||||| || || || || |||||||| ||||||||||| ||| Sbjct 3032167 CCTCCAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACGAAGATCTGCATTTTC 3032219 Score = 95.1 bits (104), Expect = 8e-15 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | || | || |||||||| || || ||||| Sbjct 3031569 TCCTTCTGGATGTTGTAGTCTGAGAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAG 3031628 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||| ||| | || | || |||||||| ||||| ||||| || Sbjct 3031629 ATCAGCCTCTGCTGATCTGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGAC--AT 3031686 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| || |||||| || | || ||||| || || || || ||||||| Sbjct 3031687 TCTCAATGGTGTCACTGGGCTCAACCTCCAGAGTGATGGTCTTGCCTGTCAGGGTCTTCA 3031746 Query 34969 CAAAGATCTGCAT 34981 | ||||||||||| Sbjct 3031747 CGAAGATCTGCAT 3031759 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || | | | || | || |||||||| || || ||||| Sbjct 3031341 TCCTTCTGGATGTTGTAGTCGGACAAGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAG 3031400 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | || |||||||| ||||| ||||| || Sbjct 3031401 ATCAGCCTCTGCTGGTCGGGTGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGAC--AT 3031458 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| || |||||| || | || ||||| || || || || ||||||| Sbjct 3031459 TCTCAATGGTGTCACTGGGCTCAACCTCCAGAGTGATGGTCTTCCCTGTCAGGGTCTTCA 3031518 Query 34969 CAAAGATCTGCAT 34981 | ||||||||||| Sbjct 3031519 CGAAGATCTGCAT 3031531 >seq220 Length=9331205 Score = 109 bits (120), Expect = 4e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || ||| | || | || |||||||| || || || || Sbjct 1328930 TTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAA 1328989 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | ||||||||| | || | ||||||||||| ||||| || ||| Sbjct 1328990 GATCAGCCTCTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTCACGTT 1329049 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | |||| || ||| || |||| ||| ||||| || || || || |||||||| Sbjct 1329050 CTCAATAGTATCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 1329109 Query 34970 AAAGATCTGCATATT 34984 |||||||||||| || Sbjct 1329110 AAAGATCTGCATGTT 1329124 Score = 100 bits (110), Expect = 2e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || ||| | || |||| |||||||| || || || || Sbjct 1328702 TTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTCCCAGCGAA 1328761 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | |||||||| | || | || ||||| || ||||| || ||| Sbjct 1328762 GATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTT 1328821 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | |||| || ||| || |||| ||| ||||| || || || || |||||||| Sbjct 1328822 CTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 1328881 Query 34970 AAAGATCTGCATA 34982 ||||||||||||| Sbjct 1328882 AAAGATCTGCATA 1328894 Score = 96.9 bits (106), Expect = 2e-15 Identities = 139/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | || | || |||||||| || || ||||| Sbjct 1328475 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCAGCAAAG 1328534 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | | |||||||| | || | ||||||||||| ||||| || || || Sbjct 1328535 ATCAACCCCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCAC--AT 1328592 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | || | || |||||| || | ||| ||||| || || || || ||||||| Sbjct 1328593 TCTCAATAGTATCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCA 1328652 Query 34969 CAAAGATCTGCATA 34982 |||||||||||||| Sbjct 1328653 CAAAGATCTGCATA 1328666 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/195 (71%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || ||| || |||| |||||||| || | || || Sbjct 1327790 TTCCTTCTGGATGTTGTAGTCAGACAGGGAGCGCCCATCTTCCAGCTGCTTCTCAGCGAA 1327849 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | ||||||||| | || | ||||||||||| |||| || || | Sbjct 1327850 GATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTGGGCCTTCAC--A 1327907 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | |||| || ||| || |||| ||| ||||| || || || || |||||| Sbjct 1327908 TTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 1327967 Query 34968 ACAAAGATCTGCATA 34982 ||| ||||||||||| Sbjct 1327968 ACACAGATCTGCATA 1327982 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/195 (71%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || ||| || |||| |||||||| || | || || Sbjct 1328018 TTCCTTCTGGATGTTGTAGTCAGACAGGGAGCGCCCATCTTCCAGCTGCTTCTCAGCGAA 1328077 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | ||||||||| | || | ||||||||||| |||| || || | Sbjct 1328078 GATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTGGGCCTTCAC--A 1328135 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | |||| || ||| || |||| ||| ||||| || || || || |||||| Sbjct 1328136 TTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 1328195 Query 34968 ACAAAGATCTGCATA 34982 ||| ||||||||||| Sbjct 1328196 ACACAGATCTGCATA 1328210 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/195 (71%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || ||| || |||| |||||||| || | || || Sbjct 1328246 TTCCTTCTGGATGTTGTAGTCAGACAGGGAGCGCCCATCTTCCAGCTGCTTCTCAGCGAA 1328305 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | ||||||||| | || | ||||||||||| ||||| || || | Sbjct 1328306 GATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCAC--A 1328363 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | |||| | || || |||| ||| ||||| || || || || |||||| Sbjct 1328364 TTCTCAATGGTGTCACTTGGTTCCACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 1328423 Query 34968 ACAAAGATCTGCATA 34982 ||||||||||||||| Sbjct 1328424 ACAAAGATCTGCATA 1328438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324618751360584