Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq307 120 3e-22 seq3752 105 8e-18 >seq307 Length=12913425 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||||||||| || || | ||| |||||||| || | |||||||| | ||||||||| | Sbjct 4487512 CCTCGTCTCTGCTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 4487453 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||| || || || ||||| || ||||||||||| || ||||| || |||||||||| Sbjct 4487452 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACCGCTGCAAAAG 4487393 Query 19103 CAACTAGTCTTTCTCC 19118 | |||| | |||||| Sbjct 4487392 CTACTACACGTTCTCC 4487377 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 4/89 (4%) Strand=Plus/Minus Query 19244 TCAATAA----ACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAA 19299 ||||||| |||||||||||||||||| |||||||| || || ||||| || || || Sbjct 4485278 TCAATAAGCAGACTGTACATTTCTGAATGTATATTTTCCATGGCAATCTGGAAGCCATAG 4485219 Query 19300 AAACATCTTGCTTCTGTTATCTGTACTTC 19328 ||||| | |||||||| || |||||||| Sbjct 4485218 AAACAACGAGCTTCTGTGATTTGTACTTC 4485190 >seq3752 Length=30765690 Score = 105 bits (116), Expect = 8e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| || || || | ||||||||||| || || || | Sbjct 11115985 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTGAGTCCAGGCATCAGGCCCCTCTTCT 11116044 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||| ||||||| |||||| || || |||||||| || ||||| ||||| ||||| | Sbjct 11116045 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 11116104 Query 19103 CAACTAGTCTTTCTCC 19118 |||| | ||| || || Sbjct 11116105 CAACCACTCTCTCACC 11116120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562082430070920