Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq66 116 3e-20 >seq66 Length=2448537 Score = 116 bits (128), Expect = 3e-20 Identities = 114/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| ||| | ||||||||||| ||||| || ||||| || ||||| ||||| Sbjct 2003218 GTTACTAATGCTGTAGTGACTGTACCAGCCTATTTCAACGACTCTCAGCGTCAGGCTACA 2003159 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| ||||| || || ||||| || | ||||| || || || |||||| Sbjct 2003158 AAAGATGCTGGAACCATTGCAGGGCTCAATGTCCTGAGAATTATTAACGAGCCAACTGCT 2003099 Query 550511 GCTGCACTTGCATATGGACTTGATAAA 550537 ||||| | || ||||| || || ||| Sbjct 2003098 GCTGCCATAGCCTATGGGCTGGACAAA 2003072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029097524433970