Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq307 125 8e-24 seq3752 95.1 1e-14 >seq307 Length=12913425 Score = 125 bits (138), Expect = 8e-24 Identities = 105/129 (81%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 || ||||| || || | ||| |||||||| || | ||| |||||||| |||||||| || Sbjct 4487510 TCGTCTCTGCTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 4487451 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | |||||| |||| ||||||||| ||||||||||| || ||||| || |||||||| ||| Sbjct 4487450 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACCGCTGCAAAAGCT 4487391 Query 37320 ACAAGACGT 37328 || | |||| Sbjct 4487390 ACTACACGT 4487382 >seq3752 Length=30765690 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 |||||||| || || | |||||| || || || | ||| ||||| | || || || || Sbjct 11115987 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTGAGTCCAGGCATCAGGCCCCTCTTCTTC 11116046 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||||||||| || ||||| || || |||||||| || ||||||||||| ||||| || Sbjct 11116047 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCA 11116106 Query 37320 AC 37321 || Sbjct 11116107 AC 11116108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592289012938120