Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq12 122 2e-22 seq230 111 3e-19 seq307 84.2 4e-11 >seq12 Length=1165876 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||||| ||| ||||| ||||| ||||| || || || | | ||||| || || Sbjct 1048299 AGGACCTTCTGCTTGAGCTGGGCGACCTGTTCGCGGAGGAGGCTGGCGGTGGAGGCCAAC 1048240 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | |||||| |||||| ||||||||||| || | ||| || ||||| Sbjct 1048239 TCCGTGTTCTGGCTCTTGAGGCTCTTCACCTTCTCCTCCAGGCGGGAGATACGCTCCAGC 1048180 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 || | | |||||| |||| ||| || | |||||||| || || || | |||||||||| Sbjct 1048179 TTCCTCTTGCGGCACTTGGAGGCGGCGATGCGGTTCCTCAGCCTTTTCCTTTCCGCCTTG 1048120 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGA 241626 || |||||||| ||||||||||| || || Sbjct 1048119 ATCCGTTCCTGCGTGTCCATGTCGATGGGGGA 1048088 >seq230 Length=477728 Score = 111 bits (122), Expect = 3e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||||| || || || ||||||||||||||| |||||| |||| |||||| ||| Sbjct 342989 GTGTACTCCACTATTTCTGTACACAGGTTGCTGCATTTGATGGTCCCCAAGTTCTGCTGG 343048 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 || |||| |||| || || ||||||||||||||||| | |||||||| ||| Sbjct 343049 TTGCTCTTTCGGTTGCAGGAGTCTTTGTAGAGCATGTAGGGCGTGCCGGTCTCCGTCTGC 343108 Query 213648 GACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGACA 213698 ||| | | || | |||||| | | |||||| ||||||| | |||| Sbjct 343109 GACTCGATGATGGCGTACCAGAGCTGCTGGGCCTTCACCACCCTGCGGACA 343159 Score = 96.9 bits (106), Expect = 6e-15 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 213813 ACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTC 213872 |||| || |||||| || || || | ||| || || ||| |||||||||| | | | Sbjct 345689 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCCCTGGCTCGCTGC 345748 Query 213873 TCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGC 213932 || || |||| ||| || || || ||||| |||||||||||| |||||||||| Sbjct 345749 TCCTCTTTCCCAGTGTTCTTCTTTAGGTCAAGAAACTCAAAGATGTCCAAGTGCCACGGC 345808 Query 213933 TCCATGTAGATGGCAAAGGCGCCCGGCCTCT 213963 |||| |||||||||||| || || || |||| Sbjct 345809 TCCAGGTAGATGGCAAAAGCCCCAGGTCTCT 345839 >seq307 Length=12913425 Score = 84.2 bits (92), Expect = 4e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 ||||| | ||||||||| |||| || || ||| |||||||| | || || | || Sbjct 4487510 TCGTCTCTGCTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 4487451 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 ||||| ||||||| || ||||||||||| |||||||| || ||||| || || || || Sbjct 4487450 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACCGCTGCAAAAGC 4487392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931489099467520