Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq87 235 6e-57 seq105 156 5e-33 >seq87 Length=2429215 Score = 235 bits (260), Expect = 6e-57 Identities = 601/909 (66%), Gaps = 7/909 (1%) Strand=Plus/Minus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 ||||||||| ||| || |||| ||||| || || || |||||| || ||| || | Sbjct 269137 TGTGTCGCAAATGCTCTTCCAAACATTTCACTGCAAAAGGGTCAACATCAGTGTCAAACT 269078 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 |||| || || | ||||| ||| |||||||||||| || |||||| | ||| || | Sbjct 269077 TATTAGCAAAGAAGTGGTG---GTTTCGTAGGATCCAGTTCAGGTCTCCTGCCCCAAAAA 269021 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 | ||||| || || | || || || |||| || ||||| | || |||||| |||| Sbjct 269020 CACAGACAGAGCGAACATGAACTCCACTGCATGGTGGGTAGGGTGCACCTTTCAATACGT 268961 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 ||||||| ||||||||||||| ||||||||||| | || | |||||| || ||| | Sbjct 268960 CACCTTCAAAGTACTGCCACTTGACAAACCTGGCCACTGCATTCATGTCAGAAACGTCAT 268901 Query 160285 ATTTGTACATCAG-GGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCAC 160343 | ||| || || | ||| ||||| || || | || || | ||| | || |||||| Sbjct 268900 ACTTG-CCACTAGAAGAAACTGCACCCGGGACTTCAGGGATTCTCTGAATTGTTGCCCAC 268842 Query 160344 AGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTG 160403 |||| || || |||||||| || || || | ||| || ||||||| ||| ||| Sbjct 268841 AGGTACTCATCTGGGCTGTATGTATCTTTCGCCCACTCAATGAACTTAAGTATTTTGCTG 268782 Query 160404 TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAAT 160463 | || | || | ||| | || || || || || || ||||| || Sbjct 268781 CTTTCTAATACATATTCTACAAATCTTCTACTAACTACGAAATAGGCACTTCCGGAAAAA 268722 Query 160464 ATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTC 160523 || || | | ||| |||| |||||||| || ||||| | || | Sbjct 268721 ATTGGAGTACTGAGAGGTGGCGGTTCTTTGTCTACGCCTGTGTTCTTTATTCTACCATCA 268662 Query 160524 ACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCT 160583 | | | | || | || |||||||| || || | ||||| ||| || || Sbjct 268661 ATAATCTCATGGTGTTTTTTCCACCTAACTTCTTTATAAATGGGCATTTTTTCTGTTTCC 268602 Query 160584 AGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGC 160643 | ||||| |||| | ||| | ||| | | || || || || |||| ||||| | Sbjct 268601 AAGCTGTTTTCACCTTTGAGGGCTTTTAATTTCTCTACTATTTCCTGGTTGGTCTTTATA 268542 Query 160644 GGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGG 160703 |||||||| | || || | |||||| | ||| ||||| || | || || || Sbjct 268541 GGAAAGTCCATGCCACAGAGGTTTATTAGGTATTTCCAGTTTGAACTTCTTCTGTAGAGA 268482 Query 160704 TCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCT 160763 || ||||||| ||||| ||||||||||| | |||||| ||||| || || || ||||| Sbjct 268481 TCTTTCATGCAGTTAATGTCTGCCTGCACCCTGCTCCATGAAGCATATACAACACTCTCT 268422 Query 160764 AGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAG 160823 | | |||| | |||||| ||||| ||||| || || |||||| ||| | ||| || Sbjct 268421 AACTGGCTGGAAATAAAGACATTATCAAAACATGAGACTATTCCCTTCACAG-CAGCAAA 268363 Query 160824 AACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGAT 160882 || || | | |||| ||| || || | ||| || | |||||||| || ||||| Sbjct 268362 AAAGGATTCTGGAGACTTTTTGTCAACATGAATGCAGTAAAAATTCTGAGGGGCATAGAT 268303 Query 160883 GGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTAT 160942 | || || | | || | |||||| || || |||| | || || ||||| || || Sbjct 268302 TGATCTTAGAAGTCGATCAAGCATCTCAATTTTGTGATAAACTACTATTGAGTAAGCAAT 268243 Query 160943 CGGAAACTC 160951 ||||| || Sbjct 268242 TGGAAATTC 268234 >seq105 Length=17183596 Score = 156 bits (172), Expect = 5e-33 Identities = 248/353 (70%), Gaps = 7/353 (2%) Strand=Plus/Plus Query 160038 AGCGATCTGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCG 160097 |||| ||||| ||||| || || || || || |||| ||||| |||| || | | | Sbjct 3502294 AGCGCACTGTGCCGCAGGTGCTCCTCGAGGCACTGGATGGCGACATCGTCCAC--CGTAG 3502351 Query 160098 --TCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGG 160155 ||||| || || || || || ||||| | ||| || |||||| || ||| || | Sbjct 3502352 GATCGAACTTGTTGGCCAAGAGGTGGTGC---TGCTGGAGCATCCAGGCCAGGTCGCCCG 3502408 Query 160156 ACCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTT 160215 |||| | | ||||||||| || |||| |||| |||| ||| |||| | || |||| Sbjct 3502409 CCCCGTAAATGCAGACGGAGCGCTGGTGCTTGCCGGTGCAGGGCTGGTAAGGCGCGCCTT 3502468 Query 160216 TCGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGG 160275 | |||||| || ||||| |||||| || | | ||| | || | |||||| | Sbjct 3502469 TGCTGGTGTCACCCTCCAGGTACTCCCACTTGACCAGGCGGGCCAGGGCGTTCATGTCTG 3502528 Query 160276 AGGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGG 160335 || || | | |||| || | || |||||| || ||||||||||| || | |||| Sbjct 3502529 AGAGGTGGAACTTGTCATTCTGAGGCCTGGCACCCGGCACGCCGGGCATGCGGTTGAGGG 3502588 Query 160336 TGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAAC 160388 ||||||| | ||| |||||||||||||| |||||||| | ||| || | |||| Sbjct 3502589 TGGCCCAGATGTGCTCGTCGGGGCTGTAGGTGTCCTTGGCCCACTCAAGGAAC 3502641 Score = 156 bits (172), Expect = 5e-33 Identities = 248/353 (70%), Gaps = 7/353 (2%) Strand=Plus/Plus Query 160038 AGCGATCTGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCG 160097 |||| ||||| ||||| || || || || || |||| ||||| |||| || | | | Sbjct 3512352 AGCGCACTGTGCCGCAGGTGCTCCTCGAGGCACTGGATGGCGACATCGTCCAC--CGTAG 3512409 Query 160098 --TCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGG 160155 ||||| || || || || || ||||| | ||| || |||||| || ||| || | Sbjct 3512410 GATCGAACTTGTTGGCCAAGAGGTGGTGC---TGCTGGAGCATCCAGGCCAGGTCGCCCG 3512466 Query 160156 ACCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTT 160215 |||| | | ||||||||| || |||| |||| |||| ||| |||| | || |||| Sbjct 3512467 CCCCGTAAATGCAGACGGAGCGCTGGTGCTTGCCGGTGCAGGGCTGGTAAGGCGCGCCTT 3512526 Query 160216 TCGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGG 160275 | |||||| || ||||| |||||| || | | ||| | || | |||||| | Sbjct 3512527 TGCTGGTGTCACCCTCCAGGTACTCCCACTTGACCAGGCGGGCCAGGGCGTTCATGTCTG 3512586 Query 160276 AGGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGG 160335 || || | | |||| || | || |||||| || ||||||||||| || | |||| Sbjct 3512587 AGAGGTGGAACTTGTCATTCTGAGGCCTGGCACCCGGCACGCCGGGCATGCGGTTGAGGG 3512646 Query 160336 TGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAAC 160388 ||||||| | ||| |||||||||||||| |||||||| | ||| || | |||| Sbjct 3512647 TGGCCCAGATGTGCTCGTCGGGGCTGTAGGTGTCCTTGGCCCACTCAAGGAAC 3512699 Score = 109 bits (120), Expect = 6e-19 Identities = 188/271 (69%), Gaps = 4/271 (1%) Strand=Plus/Plus Query 160701 AGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTC 160760 |||||| |||||| || | || |||||||| ||| |||||| || || || || | Sbjct 3502951 AGGTCCTGCATGCAGTTGAGGTCAGCCTGCACCCGGGACCAGGAGGCATAGACCACACTT 3503010 Query 160761 TCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGA 160820 || || ||||||||||||||||| ||| || | ||||| || ||| ||| Sbjct 3503011 TCCAGGCGGCTGGCCACAAAGACGTTGGGGAAGCAGGCTACGATGGCCCGCACGGCCTCC 3503070 Query 160821 AAGAA--CATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGT 160878 ||| || || | ||| | ||| ||||| || || || | ||||||||| || | Sbjct 3503071 TGGAAGTCAGCT--GGAGACTTGCTGTCAACGTGGACACAGTAGATGTTCTGAGGGGCAT 3503128 Query 160879 AGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGG 160938 |||||| | || | || ||| |||||||| || || | ||||| || || ||||||| Sbjct 3503129 AGATGGATCGCAGGAGCCGCTCAAACATCTCAATTTTGTCGTGGATGACCATGGAGTAGG 3503188 Query 160939 CTATCGGAAACTCGGTCTCCTCGCGACTCAG 160969 | || || ||||| | ||| || | ||||| Sbjct 3503189 CAATGGGGAACTCTGCCTCTTCCTGGCTCAG 3503219 Score = 109 bits (120), Expect = 6e-19 Identities = 188/271 (69%), Gaps = 4/271 (1%) Strand=Plus/Plus Query 160701 AGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTC 160760 |||||| |||||| || | || |||||||| ||| |||||| || || || || | Sbjct 3513009 AGGTCCTGCATGCAGTTGAGGTCAGCCTGCACCCGGGACCAGGAGGCATAGACCACACTT 3513068 Query 160761 TCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGA 160820 || || ||||||||||||||||| ||| || | ||||| || ||| ||| Sbjct 3513069 TCCAGGCGGCTGGCCACAAAGACGTTGGGGAAGCAGGCTACGATGGCCCGCACGGCCTCC 3513128 Query 160821 AAGAA--CATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGT 160878 ||| || || | ||| | ||| ||||| || || || | ||||||||| || | Sbjct 3513129 TGGAAGTCAGCT--GGAGACTTGCTGTCAACGTGGACACAGTAGATGTTCTGAGGGGCAT 3513186 Query 160879 AGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGG 160938 |||||| | || | || ||| |||||||| || || | ||||| || || ||||||| Sbjct 3513187 AGATGGATCGCAGGAGCCGCTCAAACATCTCAATTTTGTCGTGGATGACCATGGAGTAGG 3513246 Query 160939 CTATCGGAAACTCGGTCTCCTCGCGACTCAG 160969 | || || ||||| | ||| || | ||||| Sbjct 3513247 CAATGGGGAACTCTGCCTCTTCCTGGCTCAG 3513277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577192121204280