Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq73 87.8 2e-12 >seq73 Length=26452829 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 48074 CACCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCT 48133 |||| ||||| || | ||| || ||||| |||||||| |||| || | |||||||| | Sbjct 14113468 CACCGTAAGGCGATCTTGGGTAAAAAGGGGTGGTCTCCTTCTGCGGGATTTCTTGCACTT 14113409 Query 48134 TACCATAAAGTTCACTGGTGGATGCTTGATAGA 48166 | ||| |||||||||||||||| ||||| |||| Sbjct 14113408 TTCCAAAAAGTTCACTGGTGGAGGCTTGGTAGA 14113376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665463179993960