Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq173 320 2e-82 seq220 185 1e-41 seq26 167 3e-36 seq66 158 2e-33 seq29 89.7 7e-13 seq230 84.2 3e-11 >seq173 Length=3317996 Score = 320 bits (354), Expect = 2e-82 Identities = 1030/1588 (65%), Gaps = 19/1588 (1%) Strand=Plus/Plus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 || || || ||||| | || || || ||||| || || || || | || ||| Sbjct 1171765 GCAATCGGCATCGACCTGGGCACCACGTACTCCTGCGTGGGCGTCTTCCAGCATGGCAAA 1171824 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || ||||| ||| | || ||||| || |||||||| || || ||||| ||||| || Sbjct 1171825 GTGGAGATCATCGCCAACGACCAGGGCAACCGTACCACGCCCAGCTACGTGGCCTTCACC 1171884 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 |||| || || ||| | || |||||||| || || ||| || |||||||| | ||| Sbjct 1171885 GATACAGAGCGCCTCATCGGGGATGCCGCCAAGAACCAGGTGGCCATGAACCCCACCAAC 1171944 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || |||| || || ||||| || || || ||||||| | ||| | || || | Sbjct 1171945 ACCATCTTCGATGCCAAGCGCCTCATCGGCCGCAAGTATGACGATCCCACGGTGCAGTCC 1172004 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAAT 195598 || || ||| ||||| | | || || || || || ||||| | | | | Sbjct 1172005 GACATGAAGCACTGGCCCTTCCGTGTGGTGAA---TGAGGGTGGCAAGCCCAAGGTGCAA 1172061 Query 195599 GTTGAATTTCACGGTGAGAAGAA-ACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTT 195657 || || | | || |||| ||| || | | | ||||| || || || ||||| | Sbjct 1172062 GTGGAGTACAAGGGCGAGATGAAGACCTTCTTC-CCCGAGGAGATCAGCTCCATGGTCCT 1172120 Query 195658 GATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGT 195717 | ||||||||||||| ||| || | | | |||| | || | |||| || | Sbjct 1172121 TACCAAGATGAAGGAGATTGCTGAGGCCTACCTGGGGCGCAAGGTACAGAATGCTGTCAT 1172180 Query 195718 GACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTAT 195777 || || ||||||||||||| ||| || || || ||||| || || || |||| | || Sbjct 1172181 CACGGTGCCTGCTTACTTCAATGACTCCCAGCGCCAGGCCACCAAAGATGCTGGCACCAT 1172240 Query 195778 TGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGG 195837 | || || ||| | | ||||||||||| || ||||| ||||| || || ||||| Sbjct 1172241 CACTGGCCTTAACGTGATGCGTATTATCAATGAGCCCACAGCAGCTGCTATAGCCTATGG 1172300 Query 195838 TCTGGACAAGAA-----CAAGGAC-GAAGATAAAAATGTATTGATCTTTGATCTCGGTGG 195891 |||||||||| | || | | || || || || | |||||||| | || || Sbjct 1172301 CTTGGACAAGAAAGGTACGCGGGCTGGGGAGAAGAACGTGCTCATCTTTGACTTGGGAGG 1172360 Query 195892 TGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTAC 195951 || || |||||||| || | || | ||||| | ||| || || || || ||| | || Sbjct 1172361 GGGCACTTTTGATGTGTCTATCCTGACCATTGAGGATGGCATCTTTGAGGTGAAGTCCAC 1172420 Query 195952 TGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGTC 196011 ||||| || || ||||| ||||| || || || || || | | ||||| Sbjct 1172421 AGCTGGAGACACCCATCTGGGTGGGGAGGACTTTGACAACCGCATGGTGAACCATTTCGT 1172480 Query 196012 TGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCG 196071 || |||||| || ||| | ||| || ||| |||| || |||| | | || Sbjct 1172481 GGAAGAGTTCAAGCGTAAGCACAAGCGCGACATTGCTGGCAACAAGCGGGCGGTGAGGCG 1172540 Query 196072 GCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGT 196131 ||| | || || ||||| | || || || || ||| ||| | | ||| | | | Sbjct 1172541 GCTGCGTACGGCTTGTGAGAGGGCGAAGCGCACCCTCAGCTCTTCCACACAAGCTAGCAT 1172600 Query 196132 TGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTT 196191 |||||| || || | | ||| || ||||||||||| || | ||||| ||||| || || Sbjct 1172601 TGAGATCGACTCCCTCTATGAGGGCATTGACTTCTACACCTCCATTACTCGTGCCCGCTT 1172660 Query 196192 TGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCG 196251 || ||| | || | ||| | || | |||| || || || | | || || Sbjct 1172661 CGAGGAGCTCAATGCCGATCTCTTCCGTGGCACACTGGAGCCGGTGGAGAAGGCTCTGCG 1172720 Query 196252 TGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCG 196311 ||| || ||| | || ||| || | | || || || || ||||| || || || || Sbjct 1172721 TGATGCCAAGCTAGACAAGGGCCAGATCCAGGAGATCGTGCTGGTGGGTGGCTCCACTCG 1172780 Query 196312 TATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAAC 196371 ||| || ||||| ||| || | || |||||||||| ||||| | ||||| | Sbjct 1172781 TATCCCCAAGATCCAAAAGCTCCTACAGGACTTCTTCAATGGCAAAGAGCTCAACAAGAG 1172840 Query 196372 GATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGG 196431 |||||||| ||||| || ||||||||||| || || || || || ||||| |||| | Sbjct 1172841 CATCAACCCCGATGAGGCTGTTGCTTATGGGGCTGCTGTGCAAGCAGCTAT--CCTCATG 1172898 Query 196432 TGTTGACAA---TAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCT 196488 | ||||| | | || || || ||||| ||||| | ||||| | || | ||||| Sbjct 1172899 -GGAGACAAGTCTGAGAATGTGCAGGATCTGCTGCTGTTGGATGTCACCCCTCTGTCCCT 1172957 Query 196489 GGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCC 196548 ||| | || ||||| ||||| || ||||| | || | | ||||| || || || Sbjct 1172958 GGGCATCGAGACAGCTGGTGGGGTGATGACCGCTCTCATCAAGCGCAACACCACCATCCC 1173017 Query 196549 GACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCA-ACCAGGTGTTCATATTC 196607 || || | || ||| | || || || || || || | || |||| | | | Sbjct 1173018 CACCAAACAAACTCAGACCTTCACCACCTACTCAGACAACCAGAGCA-GTGTCCTAGTCC 1173076 Query 196608 AAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTTTCGATT 196667 | || || ||||| || | || | ||||| ||| | | || || | || || Sbjct 1173077 AGGTGTACGAAGGTGAGAGGGCCATGACGAAGGACAACAACTTGCTGGGCAAGTTTGACC 1173136 Query 196668 TGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAG 196727 | ||||| || || | || ||| | || || || |||||| | ||| || || || | Sbjct 1173137 TAACGGGCATCCCTCCGGCCCCCCGTGGAGTCCCCCAGATTGAGGTTACTTTTGACATCG 1173196 Query 196728 ACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGA 196787 | || || || || || ||||||| || | ||||||| | || || | |||| Sbjct 1173197 ATGCCAACGGTATCCTGAACGTCAGCGCCGTGGACAAGAGCACGGGTAAGGAGAACAAGA 1173256 Query 196788 TTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAG 196847 | || ||||||||||| || || ||| ||||| || || || |||||||| |||| Sbjct 1173257 TCACCATCACCAATGACAAAGGTCGCCTTAGCAAGGATGACATCGACCGTATGGTGCAAG 1173316 Query 196848 ATGCGGAAAAGTACAGGGAAGAAGACGA 196875 | || || || |||| | ||| || || Sbjct 1173317 AAGCAGAGAAATACAAAGCAGAGGATGA 1173344 >seq220 Length=9331205 Score = 185 bits (204), Expect = 1e-41 Identities = 179/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919 ||||||| ||||||||||| ||||| ||||| || || |||||||||||||| ||| | Sbjct 1328895 GTATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCA 1328836 Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979 ||||| || || ||| | || |||||||| || |||||||||||||| || || || | Sbjct 1328835 GTGACACCATTGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCTGACC 1328776 Query 171980 AGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACA 172039 |||| | || || || ||||| || ||||| |||||||| || ||||| |||| |||| Sbjct 1328775 AGCAGAGGCTGATCTTCGCTGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACA 1328716 Query 172040 ACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 || | || ||||| || ||||| || ||||| || | || |||||||| Sbjct 1328715 ACATCCAGAAGGAATCCACTCTGCATCTTGTGCTGCGCCTGAGGGGTGGT 1328666 Score = 168 bits (186), Expect = 9e-37 Identities = 177/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || ||||||| ||||||||||| ||||| ||||| || || |||||||| ||||||||| Sbjct 1328670 GTGGTATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGC 1328611 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 | || || || || || | || |||||||| || || ||||| ||||| || || | Sbjct 1328610 CCAGCGATACTATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTG 1328551 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036 | ||||| | | || |||||||| || ||||| ||||| || || ||||| |||| | Sbjct 1328550 ACCAGCAGGGGTTGATCTTTGCTGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACT 1328491 Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 ||||| | || |||||||| ||||| || ||||| || | || |||||||| Sbjct 1328490 ACAACATCCAGAAGGAGTCCACTCTGCATCTTGTGCTGCGCCTGAGGGGTGGT 1328438 Score = 154 bits (170), Expect = 2e-32 Identities = 174/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || ||||||| ||||||||||| ||||| ||||| || || |||||||||||||| || Sbjct 1328442 GTGGTATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTGGAAC 1328383 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 | ||||| || || || | || |||||||| || || ||||| ||||| || || | Sbjct 1328382 CAAGTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAG 1328323 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036 | ||||| | || || || |||| || ||||| |||||||| || |||| |||| | Sbjct 1328322 ACCAGCAGAGGCTGATCTTCGCTGAGAAGCAGCTGGAAGATGGGCGCTCCCTGTCTGACT 1328263 Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 ||||| | || ||||| || || || || ||||| || | || |||||||| Sbjct 1328262 ACAACATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGGGGTGGT 1328210 Score = 150 bits (166), Expect = 2e-31 Identities = 173/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || ||||||| |||| |||||| ||||| ||||| || || |||||||||||||| ||| Sbjct 1328214 GTGGTATGCAGATCTGTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGC 1328155 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 | ||||| || || || | || ||| |||| || || ||||| ||||| || || | Sbjct 1328154 CCAGTGACACCATTGAGAATGTGAAGGCCCAGATCCAGGACAAGGAGGGCATCCCCCCAG 1328095 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036 | ||||| | || || || |||| || ||||| |||||||| || |||| |||| | Sbjct 1328094 ACCAGCAGAGGCTGATCTTCGCTGAGAAGCAGCTGGAAGATGGGCGCTCCCTGTCTGACT 1328035 Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 ||||| | || ||||| || || || || ||||| || | || |||||||| Sbjct 1328034 ACAACATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGGGGTGGT 1327982 Score = 149 bits (164), Expect = 8e-31 Identities = 172/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || ||||||| |||| |||||| ||||| ||||| || || |||||||||||||| ||| Sbjct 1327986 GTGGTATGCAGATCTGTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGC 1327927 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 | ||||| || || || | || ||| |||| || || ||||| ||||| || || | Sbjct 1327926 CCAGTGACACCATTGAGAATGTGAAGGCCCAGATCCAGGACAAGGAGGGCATCCCCCCAG 1327867 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036 | ||||| | || || || |||| || ||||| |||||||| || |||| |||| | Sbjct 1327866 ACCAGCAGAGGCTGATCTTCGCTGAGAAGCAGCTGGAAGATGGGCGCTCCCTGTCTGACT 1327807 Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 ||||| | || ||||| || || || || ||||| || | || ||||||| Sbjct 1327806 ACAACATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGGGGTGG 1327755 Score = 149 bits (164), Expect = 8e-31 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| ||||| ||||| || || |||||||||||||| ||| | Sbjct 1329121 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 1329062 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || || || ||| | || |||||||| || || ||||| || || || || || ||| Sbjct 1329061 GATACTATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCAGACCAG 1329002 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || || ||||| || ||||| ||||| || || ||||| |||| |||||| Sbjct 1329001 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAAC 1328942 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 | || ||||| || || || || ||||| || Sbjct 1328941 ATCCAGAAGGAATCCACCCTCCATCTTGTGCT 1328910 >seq26 Length=11430413 Score = 167 bits (184), Expect = 3e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||| ||||| || || || || ||||| || ||||||||| | Sbjct 3031759 ATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACTCTGGAGGTTGAGCCCAGT 3031700 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || |||| |||||||| || || |||||||||||||| || |||||| Sbjct 3031699 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCAGATCAG 3031640 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || |||||||| || ||||| ||||| || || |||||| | || |||||| Sbjct 3031639 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCAGACTACAAC 3031580 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 | || |||||||| || || || ||||| || Sbjct 3031579 ATCCAGAAGGAGTCCACCCTGCATCTTGTGCT 3031548 Score = 161 bits (178), Expect = 1e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||| ||||| || || || || ||||| || ||||||||| | Sbjct 3031531 ATGCAGATCTTCGTGAAGACCCTGACAGGGAAGACCATCACTCTGGAGGTTGAGCCCAGT 3031472 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || |||| |||||||| || || |||||||||||||||||||| ||| Sbjct 3031471 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCACCCGACCAG 3031412 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || |||||||| || ||||| ||||| || || ||| | | || |||||| Sbjct 3031411 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCTTGTCCGACTACAAC 3031352 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 | || |||||||| || || || ||||| || Sbjct 3031351 ATCCAGAAGGAGTCCACCCTGCATCTTGTGCT 3031320 Score = 158 bits (174), Expect = 2e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| ||||| || || || || |||||||| ||||||||| | Sbjct 3031987 ATGCAGATCTTTGTGAAGACCCTGACAGGGAAGACCATCACCCTAGAGGTTGAGCCCAGT 3031928 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || ||||| || |||| |||||||| || || ||||| |||||||| ||||| ||| Sbjct 3031927 GATACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCCGACCAG 3031868 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || |||||||| || ||||| |||||||| || ||| | | || |||||| Sbjct 3031867 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCTTGTCCGACTACAAC 3031808 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 | || ||||| || || || ||| | || || Sbjct 3031807 ATCCAGAAGGAATCCACCCTGCACTTGGTGCT 3031776 Score = 152 bits (168), Expect = 7e-32 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||| ||||| || || || || ||||| || ||||||||| | Sbjct 3032215 ATGCAGATCTTCGTGAAGACCCTGACAGGGAAGACCATCACTCTGGAGGTTGAGCCCAGT 3032156 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || |||| |||||||| || || |||||||||||||||||||| ||| Sbjct 3032155 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCACCCGACCAG 3032096 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || |||||||| || ||||| ||||| || || ||| | | || |||||| Sbjct 3032095 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCTTGTCCGACTACAAC 3032036 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 | || ||||| || || || ||| | || || Sbjct 3032035 ATCCAGAAGGAATCCACCCTGCACTTGGTGCT 3032004 >seq66 Length=2448537 Score = 158 bits (174), Expect = 2e-33 Identities = 353/530 (67%), Gaps = 0/530 (0%) Strand=Plus/Minus Query 195875 ATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATA 195934 ||||| ||||| || ||||| || |||||||| ||| |||| | ||||||| ||| || Sbjct 2002944 ATCTTCGATCTTGGAGGTGGCACCTTTGATGTGTCAATTCTGACAATTGAAGATGGCATC 2002885 Query 195935 TTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGT 195994 || || || || | || || ||||| ||||| | ||||||||||| ||||| || Sbjct 2002884 TTTGAGGTGAAATCCACCGCAGGTGACACTCACTTGGGTGGTGAAGACTTCGACAACCGC 2002825 Query 195995 CTTCTCCGTCATTTGTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAAT 196054 | || || || || ||| ||| || ||| | ||||| || || || || Sbjct 2002824 ATGGTCAACCACTTCATTGCTGAATTCAAGCGCAAGCACAAGAAGGACATCAGTGAGAAC 2002765 Query 196055 CCTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCT 196114 ||||| | ||||| || | || || || || |||||||| || || || || || Sbjct 2002764 AAGAGGGCGGTGCGTCGCCTCCGCACGGCGTGCGAGCGTGCCAAGCGTACGCTGTCGTCC 2002705 Query 196115 ACGGCTCAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACT 196174 | | || | | | || |||||||| | | ||| || || |||||||| || | Sbjct 2002704 AGCACCCAGGCCAGCATCGAAATTGATTCTCTCTATGAGGGGATCGACTTCTACACGTCC 2002645 Query 196175 ATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCT 196234 || ||| | || || ||||||||| | ||| | || | || | |||| ||| Sbjct 2002644 ATCACCAGAGCTCGCTTTGAAGAGCTGAACGCCGACCTCTTCCGTGGCACCCTGGATCCT 2002585 Query 196235 GTTGAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTT 196294 || || | | || || || || ||| | || ||||| || | | || || || || Sbjct 2002584 GTGGAGAAGGCCCTGCGGGATGCCAAGCTCGACAAGTCGCAGATCCACGACATCGTGCTG 2002525 Query 196295 GTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAAT 196354 || || || || |||||||| || |||||||| || | || ||||||||| Sbjct 2002524 GTCGGTGGGTCCACCCGTATCCCAAAGATTCAGAAGCTCCTGCAGGATTTCTTCAATGGC 2002465 Query 196355 AAAGATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGC 196404 ||||| | ||||| | |||||||| || || || || ||||||||||| Sbjct 2002464 AAAGAGCTGAACAAGAGCATCAACCCTGACGAGGCTGTGGCTTATGGTGC 2002415 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 196610 GTATATGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTCGATTT 196668 ||||||||||||||||| | || || | ||||| ||| | | || || | || || | Sbjct 2001562 GTATATGAAGGAGAACG-TGCCATGACCAAGGACAACAACTTGCTGGGCAAGTTTGAGCT 2001504 Query 196669 GACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGA 196728 ||| || || || |||| ||||||||||| || |||||| | || ||| ||||| || Sbjct 2001503 GACTGGTATCCCCCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACCTTTGATATTGA 2001444 Query 196729 CGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGAT 196788 || || || || || ||||| | |||| ||||||| ||||||| | ||||| Sbjct 2001443 TGCCAACGGCATCCTGAACGTGTCTGCTGTGGACAAGAGCACTGGCAAGGAGAACAAGAT 2001384 Query 196789 TGTGATTACCAATGACAAGGG 196809 ||||| ||||||||||| Sbjct 2001383 CACAATTACAAATGACAAGGG 2001363 Score = 98.7 bits (108), Expect = 1e-15 Identities = 109/143 (76%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 195708 ATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACG 195767 |||| || ||||||||||| || || |||| || || || || ||||| ||||| || | Sbjct 2003211 ATGCTGTAGTGACTGTACCAGCCTATTTCAACGACTCTCAGCGTCAGGCTACAAAAGATG 2003152 Query 195768 CTGCTGCTATTGCGGGTCTAAACTGT-CTTAGAATTATCAATGAACCAACAGCGGCTGCA 195826 ||| | ||||| || || || ||| || |||||||| || || ||||| || ||||| Sbjct 2003151 CTGGAACCATTGCAGGGCTCAA-TGTCCTGAGAATTATTAACGAGCCAACTGCTGCTGCC 2003093 Query 195827 ATTGCTTATGGTCTGGACAAGAA 195849 || || ||||| |||||||| || Sbjct 2003092 ATAGCCTATGGGCTGGACAAAAA 2003070 >seq29 Length=10060041 Score = 89.7 bits (98), Expect = 7e-13 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 171963 AGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACG 172022 ||||||||| || || ||||| ||||| |||||||||||||| ||||| ||||||||||| Sbjct 2914610 AGGCATTCCTCCTGACCAGCAGCGACTGATTTTTGCTGGTAAGCAGCTAGAAGATGGACG 2914669 Query 172023 TACCCTCGCTGATTACAACGTTCAAAA 172049 || || | || ||||| ||||||| Sbjct 2914670 CACGCTGTCCGACTACAATATTCAAAA 2914696 >seq230 Length=477728 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 78638 CAAACAGAGACCGGCACCCCGTATATGCTATACAAAGACAGCTGTAACAGAAAGTCTAAC 78697 || || ||||||||||| || || ||||| ||||||||| ||| ||| ||||| ||| Sbjct 343107 CAGACGGAGACCGGCACGCCCTACATGCTCTACAAAGACTCCTGCAACCGAAAGAGCAAC 343048 Query 78698 CAAAAGAACCTAGGTGTCATCAAAAGCTCTAACCTTTGCACAGAAATTCTGGAATACAC 78756 || ||||| | || ||||||| || ||||| || |||||||| |||| ||||| Sbjct 343047 CAGCAGAACTTGGGGACCATCAAATGCAGCAACCTGTGTACAGAAATAGTGGAGTACAC 342989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657831538030160