Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq535 91.5 4e-13 >seq535 Length=101870 Score = 91.5 bits (100), Expect = 4e-13 Identities = 142/201 (71%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 302620 GTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTC- 302678 || || || || || || || || || | || || |||||||| |||||||| | ||| Sbjct 89399 GTCTTGACGGCGGTGTCGATGAGGCCCTCGCGTCCCCCCATAGCGTGGAAGAAGAACTCG 89458 Query 302679 -TTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAAT 302737 | |||| |||||| | | ||||| |||| ||||| || | ||||||| || Sbjct 89459 GTGGGGGTC--AGCCCCGCCAGGTAGGAGTTCTCCACGAAGCCCCTGCTCTCGGGCCCAT 89516 Query 302738 CGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTC 302797 ||| |||| | ||||| |||||||||| || | ||||| | ||||| || || | Sbjct 89517 AATCGTCCTTGATGAAGTGGGGCAGGGTCCGGTGTTTGAAGCCGAAGGGGATGCGTTTGC 89576 Query 302798 CATCAACGTTCTGCTGTCCCA 302818 | || ||||||||||| |||| Sbjct 89577 CCTCCACGTTCTGCTGCCCCA 89597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471746827190761