Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq26 145 7e-30 seq220 131 2e-25 seq230 86.0 6e-12 >seq26 Length=11430413 Score = 145 bits (160), Expect = 7e-30 Identities = 155/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | ||||||||| ||||| || ||||| ||| || ||| | ||| || ||||| Sbjct 3031328 ATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGCCCGTCTTCCAGCTG 3031387 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| || | || |||| |||||||||||| || |||||||||||||| |||||| Sbjct 3031388 CTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGTGGAATGCCTTCCTTGTCCTGGATCTT 3031447 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||||| | ||||| ||||| ||||||| || || | |||| ||| || || || Sbjct 3031448 GGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGAGTGATGGTCTTCCCTGT 3031507 Query 133637 CAGAGTTTTTACGAAAATCTGCATG 133661 ||| || || ||||| ||||||||| Sbjct 3031508 CAGGGTCTTCACGAAGATCTGCATG 3031532 Score = 138 bits (152), Expect = 1e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | |||||| || ||||| || ||||| ||| || ||| | ||| || ||| Sbjct 3032010 AAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGCCCGTCTTCCAGC 3032069 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| || | || |||| |||||||||||| || |||||||||||||| |||| Sbjct 3032070 TGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGTGGAATGCCTTCCTTGTCCTGGATC 3032129 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | ||||| ||||| ||||||| || || | |||| ||| || || Sbjct 3032130 TTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGAGTGATGGTCTTCCCT 3032189 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || ||||| |||||||| Sbjct 3032190 GTCAGGGTCTTCACGAAGATCTGCAT 3032215 Score = 136 bits (150), Expect = 4e-27 Identities = 153/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | ||||||||| ||||| || ||||| || | ||| | ||| || ||||| Sbjct 3031556 ATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTGCGCCCGTCTTCCAGCTG 3031615 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| || | || |||| |||||| || ||||| |||||||||||||| |||||| Sbjct 3031616 CTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGAATGCCTTCCTTGTCCTGGATCTT 3031675 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||||| | ||||| ||||| ||||||| || || | |||| ||| ||||| || Sbjct 3031676 GGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGAGTGATGGTCTTGCCTGT 3031735 Query 133637 CAGAGTTTTTACGAAAATCTGCATG 133661 ||| || || ||||| ||||||||| Sbjct 3031736 CAGGGTCTTCACGAAGATCTGCATG 3031760 Score = 122 bits (134), Expect = 8e-23 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | |||||| || ||||| || ||||| ||| || ||| | || || ||| Sbjct 3031782 AAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGCCCATCTTCCAGC 3031841 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| || | || |||| |||||||||||| || ||||| |||||||| |||| Sbjct 3031842 TGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGCGGAATGCCCTCCTTGTCCTGGATC 3031901 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | ||| | || || ||||||| || || | ||||| ||| || || Sbjct 3031902 TTGGCCTTGACATTCTCGATGGTATCACTGGGCTCAACCTCTAGGGTGATGGTCTTCCCT 3031961 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATG 133661 ||||| || || || || ||||||||| Sbjct 3031962 GTCAGGGTCTTCACAAAGATCTGCATG 3031988 >seq220 Length=9331205 Score = 131 bits (144), Expect = 2e-25 Identities = 152/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | |||||| || ||||| || ||||| || || ||| | ||| || ||||| Sbjct 1328918 ATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTG 1328977 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| ||| | || |||| ||||||||| || ||||| || |||||||| |||||| Sbjct 1328978 CTTGCCAGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGGATCTT 1329037 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||| | | ||||| || || ||||||| || |||| ||||| ||| ||||| || Sbjct 1329038 GGCCTTCACGTTCTCAATAGTATCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGT 1329097 Query 133637 CAGAGTTTTTACGAAAATCTGCATG 133661 ||| || || || || ||||||||| Sbjct 1329098 CAGGGTCTTCACAAAGATCTGCATG 1329122 Score = 125 bits (138), Expect = 7e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 ||||| || ||||| || ||||| || || ||| | || || |||||||| || Sbjct 1328697 GTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTCCCA 1328756 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || |||| ||||||||| || |||||||||||||| || |||||| ||| Sbjct 1328757 GCGAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTC 1328816 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||||| ||||| ||||||| || |||| ||||| ||| ||||| ||||| || Sbjct 1328817 ACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTC 1328876 Query 133644 TTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 1328877 TTCACAAAGATCTGCAT 1328893 >seq230 Length=477728 Score = 86.0 bits (94), Expect = 6e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 ||||||| || || || | ||||| |||||||||||||| |||| ||||| || | Sbjct 342990 TGTACTCCACTATTTCTGTACACAGGTTGCTGCATTTGATGGTCCCCAAGTTCTGCTGGT 343049 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCG 148983 ||||||| | |||||| | ||| ||||| |||||||| || ||| || ||| ||||| Sbjct 343050 TGCTCTTTCGGTTGCAGGAGTCTTTGTAGAGCATGTAGGGCGTGCCGGTCTCCGTCTGCG 343109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483398121521720