Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq105 98.7 1e-15 >seq105 Length=17183596 Score = 98.7 bits (108), Expect = 1e-15 Identities = 180/262 (69%), Gaps = 4/262 (2%) Strand=Plus/Plus Query 162724 AGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTC 162783 || ||||| | ||||| || || ||||| || || ||| || || || || || || Sbjct 3502951 AGGTCCTGCATGCAGTTGAGGTCAGCCTGCACCCGGGACCAGGAGGCATAGACCACACTT 3503010 Query 162784 TCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAGT 162843 |||| | |||| |||||||| ||| ||| || | || || || ||||||| Sbjct 3503011 TCCAGGCGGCTGGCCACAAAGACGTTGGGGAAGCAGGCTACGATGGCCCGCACGGCCTCC 3503070 Query 162844 GAGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGT 162901 ||| || | || | || || || ||||| || ||||| | ||||||||||| | Sbjct 3503071 TGGAAGTCAGCTGGA--GACTTGCTGTCAACGTGGACACAGTAGATGTTCTGAGGGGCAT 3503128 Query 162902 AGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACG 162961 |||||| | ||| | | ||| |||||||| || || | ||| | || || || || | Sbjct 3503129 AGATGGATCGCAGGAGCCGCTCAAACATCTCAATTTTGTCGTGGATGACCATGGAGTAGG 3503188 Query 162962 CTATGGGGAACTCAGCCTCCTC 162983 | ||||||||||| ||||| || Sbjct 3503189 CAATGGGGAACTCTGCCTCTTC 3503210 Score = 98.7 bits (108), Expect = 1e-15 Identities = 180/262 (69%), Gaps = 4/262 (2%) Strand=Plus/Plus Query 162724 AGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTC 162783 || ||||| | ||||| || || ||||| || || ||| || || || || || || Sbjct 3513009 AGGTCCTGCATGCAGTTGAGGTCAGCCTGCACCCGGGACCAGGAGGCATAGACCACACTT 3513068 Query 162784 TCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAGT 162843 |||| | |||| |||||||| ||| ||| || | || || || ||||||| Sbjct 3513069 TCCAGGCGGCTGGCCACAAAGACGTTGGGGAAGCAGGCTACGATGGCCCGCACGGCCTCC 3513128 Query 162844 GAGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGT 162901 ||| || | || | || || || ||||| || ||||| | ||||||||||| | Sbjct 3513129 TGGAAGTCAGCTGGA--GACTTGCTGTCAACGTGGACACAGTAGATGTTCTGAGGGGCAT 3513186 Query 162902 AGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACG 162961 |||||| | ||| | | ||| |||||||| || || | ||| | || || || || | Sbjct 3513187 AGATGGATCGCAGGAGCCGCTCAAACATCTCAATTTTGTCGTGGATGACCATGGAGTAGG 3513246 Query 162962 CTATGGGGAACTCAGCCTCCTC 162983 | ||||||||||| ||||| || Sbjct 3513247 CAATGGGGAACTCTGCCTCTTC 3513268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578404864308800