Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq3749 197 2e-44 seq231 183 4e-40 seq347 111 2e-18 seq230 96.9 5e-14 seq307 95.1 2e-13 >seq3749 Length=51414391 Score = 197 bits (218), Expect = 2e-44 Identities = 182/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 7007215 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 7007268 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | ||||||| ||| Sbjct 7007269 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCGCGC 7007328 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | |||| ||||||||||| |||||||| Sbjct 7007329 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGG 7007388 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| |||||| ||||||| ||||||||||||||||||||||| Sbjct 7007389 CTCCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 7007437 Score = 197 bits (218), Expect = 2e-44 Identities = 182/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 7013198 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 7013145 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | ||||||| ||| Sbjct 7013144 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCGCGC 7013085 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | |||| ||||||||||| |||||||| Sbjct 7013084 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGG 7013025 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| |||||| ||||||| ||||||||||||||||||||||| Sbjct 7013024 CTCCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 7012976 Score = 197 bits (218), Expect = 2e-44 Identities = 182/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 7036174 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 7036227 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | ||||||| ||| Sbjct 7036228 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCGCGC 7036287 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | |||| ||||||||||| |||||||| Sbjct 7036288 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGG 7036347 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| |||||| ||||||| ||||||||||||||||||||||| Sbjct 7036348 CTCCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 7036396 Score = 197 bits (218), Expect = 2e-44 Identities = 182/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 7037679 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 7037626 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | ||||||| ||| Sbjct 7037625 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCGCGC 7037566 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | |||| ||||||||||| |||||||| Sbjct 7037565 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGG 7037506 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| |||||| ||||||| ||||||||||||||||||||||| Sbjct 7037505 CTCCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 7037457 Score = 197 bits (218), Expect = 2e-44 Identities = 182/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 7047396 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 7047343 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | ||||||| ||| Sbjct 7047342 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCGCGC 7047283 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | |||| ||||||||||| |||||||| Sbjct 7047282 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGG 7047223 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| |||||| ||||||| ||||||||||||||||||||||| Sbjct 7047222 CTCCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 7047174 Score = 197 bits (218), Expect = 2e-44 Identities = 182/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 7103652 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 7103599 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | ||||||| ||| Sbjct 7103598 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCGCGC 7103539 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | |||| ||||||||||| |||||||| Sbjct 7103538 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGG 7103479 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| |||||| ||||||| ||||||||||||||||||||||| Sbjct 7103478 CTCCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 7103430 Score = 197 bits (218), Expect = 2e-44 Identities = 182/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 7124774 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 7124721 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | ||||||| ||| Sbjct 7124720 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCGCGC 7124661 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | |||| ||||||||||| |||||||| Sbjct 7124660 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGG 7124601 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| |||||| ||||||| ||||||||||||||||||||||| Sbjct 7124600 CTCCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 7124552 Score = 197 bits (218), Expect = 2e-44 Identities = 182/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 7147204 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 7147257 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | ||||||| ||| Sbjct 7147258 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCGCGC 7147317 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | |||| ||||||||||| |||||||| Sbjct 7147318 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGG 7147377 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| |||||| ||||||| ||||||||||||||||||||||| Sbjct 7147378 CTCCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 7147426 Score = 194 bits (214), Expect = 2e-43 Identities = 181/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || ||| ||||| Sbjct 7112110 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCTTCTAAGGCCATG 7112163 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | ||||||| ||| Sbjct 7112164 AGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCGCGC 7112223 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | |||| ||||||||||| |||||||| Sbjct 7112224 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGG 7112283 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| |||||| ||||||| ||||||||||||||||||||||| Sbjct 7112284 CTCCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 7112332 Score = 165 bits (182), Expect = 1e-34 Identities = 176/231 (76%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| |||||||| |||||| |||| |||| ||| |||| ||| Sbjct 42406365 TCTACAAGGTGCTGAAGCAGGTCCACCCCGACACCGG-----CATC-TCCTCCAAGGCCA 42406418 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || ||||||||||| | || ||||||| || ||| | Sbjct 42406419 TGGGCATCATGAACTCCTTCGTCAACGACATCTTTGAGCGCATCGCTGGAGAAGCCTCCC 42406478 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||| | || |||||||||| ||| ||| | | || ||||| ||||| ||||||| Sbjct 42406479 GCCTGGCCCACTACAACAAGCGCTCCACCATCACCTCCCGGGAGATTCAGACGGCCGTGC 42406538 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| | | | || || ||||||| ||||||||||||||||||||||| Sbjct 42406539 GCCTGCTGCTCCCGGGAGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 42406589 >seq231 Length=141314 Score = 183 bits (202), Expect = 4e-40 Identities = 180/231 (78%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||| ||||| |||||||||||||| |||| |||| ||| |||| ||| Sbjct 99328 TCTACAAAGTGCTGAAGCAGGTGCACCCGGACACCGG-----CATC-TCCTCCAAGGCCA 99275 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || ||||||||||| |||| ||||||| | |||||| | Sbjct 99274 TGGGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGGGAGGCCTCGC 99215 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||| | | |||||||||| ||| ||| | | || ||||||||||||||||| | Sbjct 99214 GCCTGGCCCATTACAACAAGCGCTCCACCATCACCTCCCGGGAGATCCAGACCGCCGTCC 99155 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||| || ||| ||| |||||||||| |||||||||||||||||||||| Sbjct 99154 GCCTCCTCCTGCCCGGGGAACTGGCCAAACACGCCGTCTCCGAGGGCACCA 99104 >seq347 Length=325237 Score = 111 bits (122), Expect = 2e-18 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 724964 CAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGA 725023 |||| ||||| ||||||||||| || ||||||||||| |||| || ||| | | || Sbjct 116995 CAAGGCCATGAGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGGCTCGCCTCAGA 117054 Query 725024 GGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGAC 725083 |||| || ||||| | | |||| | ||| ||| ||| || || ||| | ||||| Sbjct 117055 GGCCTCACGTCTGGCCCAGTACAACCACCGCTCCACCATCACCAGCCGTGAGGTGCAGAC 117114 Query 725084 CGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || ||| | ||| | ||| |||||| ||||||| ||| || ||||| |||||||||| Sbjct 117115 GGCAGTGAGGCTGCTGCTGCCCGGCGAGCTGGCCAAGCATGCTGTCTCTGAGGGCACCA 117173 >seq230 Length=477728 Score = 96.9 bits (106), Expect = 5e-14 Identities = 106/139 (76%), Gaps = 4/139 (3%) Strand=Plus/Minus Query 262091 CAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTAC 262150 ||| |||||| ||||| ||| | | || | ||||||||||||||||||||| ||||| Sbjct 343134 CAGCTCTGGTACGCCATCATCGAGTCGCAGACGGAGACCGGCACGCCCTACATGCTCTAC 343075 Query 262151 AAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAGGC--CA 262208 || ||| || ||||| | ||||||||||||||| |||| |||| || | || || Sbjct 343074 AAAGACTCCTGCAACCGAAAGAGCAACCAGCAGAACTTGGGGACCA--TCAAATGCAGCA 343017 Query 262209 ACCTGTGCACCGAGATCGT 262227 ||||||| || || || || Sbjct 343016 ACCTGTGTACAGAAATAGT 342998 >seq307 Length=12913425 Score = 95.1 bits (104), Expect = 2e-13 Identities = 90/114 (79%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 |||||||||||||| || ||||| ||| || ||| | |||||||||| ||||| Sbjct 4483804 GAGCCGCTGCTGCGGGAGAACCCCCGCCGGTTCGTCATCTTCCCCATCCAGTACCACGAC 4483863 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGT 1455829 || ||| | ||||| ||| ||||||||||||||||| ||||| || || ||||| Sbjct 4483864 ATCTGGCAGATGTA-CAAGAAGGCCGAGGCCTCCTTCTGGACGGCGGAAGAGGT 4483916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177449216251986