Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq220 134 1e-26 seq26 134 1e-26 >seq220 Length=9331205 Score = 134 bits (148), Expect = 1e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | || ||| ||| |||| ||||||||||| || ||||| Sbjct 1328474 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCAGCAAA 1328533 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||||| ||||||||| | || | || |||||||||| |||||| ||||| | | Sbjct 1328534 GATCAACCCCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATT 1328593 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || ||||| | || ||||| | ||||| || || || |||| || ||||| Sbjct 1328594 CTCAATAGTATCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 1328653 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 1328654 AAAGATCTGCAT 1328665 Score = 120 bits (132), Expect = 3e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| || | || || ||| | || ||||||||||| | || || Sbjct 1328247 TCCTTCTGGATGTTGTAGTCAGACAGGGAGCGCCCATCTTCCAGCTGCTTCTCAGCGAAG 1328306 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || ||||||||| | || | || |||||||||| |||||| ||||| | | Sbjct 1328307 ATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTC 1328366 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | ||||||||| | ||||| || || || |||| || |||||| Sbjct 1328367 TCAATGGTGTCACTTGGTTCCACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACA 1328426 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 1328427 AAGATCTGCAT 1328437 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| || | || ||| ||| |||| ||||||||||| || || || Sbjct 1328931 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAG 1328990 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || ||||||||| | || | | |||||||||| |||||| ||||| | Sbjct 1328991 ATCAGCCTCTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTCACGTTC 1329050 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | || || || | || ||||| | ||||| || || || |||| || |||||| Sbjct 1329051 TCAATAGTATCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACA 1329110 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 1329111 AAGATCTGCAT 1329121 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| || | || ||| ||| | || ||||||||||| || || || Sbjct 1328703 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTCCCAGCGAAG 1328762 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || ||||||||| | || | || ||||| ||| |||||| ||||| | Sbjct 1328763 ATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 1328822 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | || ||||| | ||||| || || || |||| || |||||| Sbjct 1328823 TCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACA 1328882 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 1328883 AAGATCTGCAT 1328893 Score = 102 bits (112), Expect = 7e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| || | || || ||| | || ||||||||||| | || || Sbjct 1327791 TCCTTCTGGATGTTGTAGTCAGACAGGGAGCGCCCATCTTCCAGCTGCTTCTCAGCGAAG 1327850 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || ||||||||| | || | || |||||||||| ||||| ||||| | | Sbjct 1327851 ATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTGGGCCTTCACATTC 1327910 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | || ||||| | ||||| || || || |||| || |||||| Sbjct 1327911 TCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACA 1327970 Query 35726 AATATCTGCAT 35736 | |||||||| Sbjct 1327971 CAGATCTGCAT 1327981 Score = 102 bits (112), Expect = 7e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| || | || || ||| | || ||||||||||| | || || Sbjct 1328019 TCCTTCTGGATGTTGTAGTCAGACAGGGAGCGCCCATCTTCCAGCTGCTTCTCAGCGAAG 1328078 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || ||||||||| | || | || |||||||||| ||||| ||||| | | Sbjct 1328079 ATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTGGGCCTTCACATTC 1328138 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | || ||||| | ||||| || || || |||| || |||||| Sbjct 1328139 TCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACA 1328198 Query 35726 AATATCTGCAT 35736 | |||||||| Sbjct 1328199 CAGATCTGCAT 1328209 >seq26 Length=11430413 Score = 134 bits (148), Expect = 1e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| |||||| ||| |||| ||||||||||| || ||||| Sbjct 3031340 CTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAA 3031399 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | |||| || ||||||||| |||||| ||| | | | Sbjct 3031400 GATCAGCCTCTGCTGGTCGGGTGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATT 3031459 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||||| ||||| || || || |||| || ||||| Sbjct 3031460 CTCAATGGTGTCACTGGGCTCAACCTCCAGAGTGATGGTCTTCCCTGTCAGGGTCTTCAC 3031519 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 3031520 GAAGATCTGCAT 3031531 Score = 134 bits (148), Expect = 1e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| |||| |||||| ||| |||| ||||||||||| || ||||| Sbjct 3032025 TCCTTCTGGATGTTGTAGTCGGACAAGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAG 3032084 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || ||||||||| | |||| || ||||||||| |||||| ||| | | | Sbjct 3032085 ATCAGCCTCTGCTGGTCGGGTGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTC 3032144 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | || ||||||| ||||| || || || |||| || ||||| Sbjct 3032145 TCAATGGTGTCACTGGGCTCAACCTCCAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACG 3032204 Query 35726 AATATCTGCATT 35737 || ||||||||| Sbjct 3032205 AAGATCTGCATT 3032216 Score = 129 bits (142), Expect = 5e-25 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| |||| |||||| ||| | || ||||||||||| || ||||| Sbjct 3031797 TCCTTCTGGATGTTGTAGTCGGACAAGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAG 3031856 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || ||||||||| | |||| || |||||||||| |||||| ||| | | | Sbjct 3031857 ATCAGCCTCTGCTGGTCGGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTC 3031916 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | || || || | || ||||| | ||||| || || || |||| || |||||| Sbjct 3031917 TCGATGGTATCACTGGGCTCAACCTCTAGGGTGATGGTCTTCCCTGTCAGGGTCTTCACA 3031976 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 3031977 AAGATCTGCAT 3031987 Score = 122 bits (134), Expect = 8e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | ||| ||| |||| ||||||||||| || ||||| Sbjct 3031568 CTCCTTCTGGATGTTGTAGTCTGAGAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAA 3031627 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||| || | ||||| || ||||||||| |||||| ||| | | | Sbjct 3031628 GATCAGCCTCTGCTGATCTGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATT 3031687 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||||| ||||| || || || |||| || ||||| Sbjct 3031688 CTCAATGGTGTCACTGGGCTCAACCTCCAGAGTGATGGTCTTGCCTGTCAGGGTCTTCAC 3031747 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 3031748 GAAGATCTGCAT 3031759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450772452145240