Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq19 102 1e-16 >seq19 Length=5382850 Score = 102 bits (112), Expect = 1e-16 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 214100 GAGATGTTTGGACTCGTGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGAGAGAGCAC 214159 ||| ||||||| | || || || || ||| |||| |||| || |||||||| || ||| Sbjct 2220740 GAGGTGTTTGGTTTGGTCCCAGGCTTGATGATGTATGCCACAATATGGCTGAGGGAACAC 2220681 Query 214160 AACAGGGTTTGCGACGTGCTGAAACAAGAGCACCCGGAATGGAACGACGAACAGCTGTTC 214219 ||| |||| || ||| | |||||||| ||||| || || ||| | || || ||||||||| Sbjct 2220680 AACCGGGTCTGTGACATCCTGAAACAGGAGCATCCAGAGTGGGATGATGAGCAGCTGTTC 2220621 Query 214220 CAGATCACT 214228 |||| |||| Sbjct 2220620 CAGACCACT 2220612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723306866274720