Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq53 116 3e-21 seq307 109 4e-19 seq3752 82.4 6e-11 >seq53 Length=23484652 Score = 116 bits (128), Expect = 3e-21 Identities = 120/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| ||||| || || ||| | || ||||| || ||| ||||||||||||| Sbjct 22066861 TGATGGCTTTGCCTCCATGCCATGCCCTTTGCCAGTTCTATGTTCTAAATGGTGAACTGT 22066802 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || ||| | ||||| ||||| || || ||||||||||| || || || || || || | Sbjct 22066801 CTTGCCAACTCTATCAGAGATCCGGAGATATGGGACTAGGAGTGCCTTTCAATATTGCCA 22066742 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 | ||| | |||||||| || |||||||| ||||| || Sbjct 22066741 GCTATTCACTGCTCACATACATGATTGCCCACGTCAC 22066705 >seq307 Length=12913425 Score = 109 bits (120), Expect = 4e-19 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 || ||||| ||| | ||||||| || ||||| ||||| || || |||||||| |||||| Sbjct 4485187 CAGGAAGTACAAATCACAGAAGCTCGTTGTTTCTATGGCTTCCAGATTGCCATGGAAAAT 4485246 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| |||||||||||||| || || || || |||||||||||| Sbjct 4485247 ATACATTCAGAAATGTACAGTCTGCTTATTGACACCTACATCAAAGAT 4485294 >seq3752 Length=30765690 Score = 82.4 bits (90), Expect = 6e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 43928 CCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATG 43987 |||||||| || ||||| ||||| ||||| ||| ||| || || |||| ||||| ||| Sbjct 11119401 CCAGAAGCGCGTTGTTTCTATGGCTTTCAGATTCTCATTGAGAACGTTCACTCGGAGATG 11119342 Query 43988 TACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||||| | || ||||| || |||||||||||| Sbjct 11119341 TACAGCTTGCTCATAGACACCTACATCAAAGAT 11119309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397437820486765