Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq66 141 3e-28 seq220 138 3e-27 seq26 134 4e-26 seq89 89.7 2e-12 >seq66 Length=2448537 Score = 141 bits (156), Expect = 3e-28 Identities = 359/539 (67%), Gaps = 8/539 (1%) Strand=Plus/Minus Query 349770 TTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGG 349829 ||||||| || ||| | || ||||| || |||||||| ||| | || ||| ||||||| | Sbjct 2002949 TTCTTATCTTCGATCTTGGAGGTGGCACCTTTGATGTGTCAATTCTGACAATTGAAGATG 2002890 Query 349830 GAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATA 349889 | || ||||| || ||| | || || ||||| || || | ||||| ||||| || || | Sbjct 2002889 GCATCTTTGAGGTGAAATCCACCGCAGGTGACACTCACTTGGGTGGTGAAGACTTCGACA 2002830 Query 349890 ATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGCTAAA-ATTGATATTGGA 349948 | || | || || || || ||||| ||||| ||||| || | || || | Sbjct 2002829 ACCGCATGGTCAACCACTTCATTGCTGAATTCAAGCG-CAAGCACAAGAAGGACATCAGT 2002771 Query 349949 GATAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTA 350008 || || || || |||||||||| | || ||||| || ||||| |||||| | | Sbjct 2002770 GAGAACAAGAGGGCGGTGCGTCGCCTCCGCACGGCGTGCGAGCGTGCCAAGCGTACGCTG 2002711 Query 350009 TCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTT 350068 || || | ||||| || || |||||||||||||| ||| || | || |||| Sbjct 2002710 TCGTCCAGCACCCAGGCCAGCATCGAAATTGATTCTCTCTATGAGGGGATCGACTTCTAC 2002651 Query 350069 TCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATG--GATCTTTTTAGAGCAACAA 350126 | || || || | ||||| |||||||| || | | || || || | | || Sbjct 2002650 ACGTCCATCACCAGAGCTCGCTTTGAAGA--GCTGAACGCCGACCTCTTCCGTGGCACCC 2002593 Query 350127 TGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAG 350186 ||||||||||||| || | | ||||| || | ||| ||||| | || Sbjct 2002592 TGGATCCTGTGGAGAAGGCCCTGCGGGATGCCAAGCTCGACAAGTCGCAGATCCACGACA 2002533 Query 350187 TAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTT 350246 | || | || ||||| || || ||||| ||||| |||| || | || || || | Sbjct 2002532 TCGTGCTGGTCGGTGGGTCCACCCGTATCCCAAAGATTCAGAAGCTCCTGCAGGATTTCT 2002473 Query 350247 TTAATGGCAAAGAAC-CTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGC 350304 | ||||||||||| | | ||| | || || || || || ||||| || |||||||| Sbjct 2002472 TCAATGGCAAAGAGCTGAACAAGAGC-ATCAACCCTGACGAGGCTGTGGCTTATGGTGC 2002415 Score = 129 bits (142), Expect = 2e-24 Identities = 119/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 349598 ACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCA 349657 || || ||| ||||||| | ||||||||||||||||| || || | |||||| || Sbjct 2003221 ACTGTTACTAATGCTGTAGTGACTGTACCAGCCTATTTCAACGACTCTCAGCGTCAGGCT 2003162 Query 349658 ACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACT 349717 |||||||||||||| | |||||| ||| | ||||| || ||||| ||||| || || ||| Sbjct 2003161 ACAAAAGATGCTGGAACCATTGCAGGGCTCAATGTCCTGAGAATTATTAACGAGCCAACT 2003102 Query 349718 GCTGCAGCAATTGCATATGGGCTTGATAAAA 349748 ||||| || || || |||||||| || |||| Sbjct 2003101 GCTGCTGCCATAGCCTATGGGCTGGACAAAA 2003071 Score = 86.0 bits (94), Expect = 2e-11 Identities = 115/157 (73%), Gaps = 5/157 (3%) Strand=Plus/Minus Query 349433 CAATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATT 349492 || |||||| | || || | ||||| ||||| || || || | || | ||| | Sbjct 2003479 CAGTCTGATATGAAGCACTGGCCTTTCACTGTGGTG---AACGATGCTGGCAGACCCAAA 2003423 Query 349493 ATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCC-GAAGAAATTTCATCAAT 349551 | |||| || || ||||| || | ||| | ||| ||||| ||||||||||| || || Sbjct 2003422 GTCCAGGTGGAGTACAAAGGCGAG-ACAAAGAGTTTCTACCCAGAAGAAATTTCTTCCAT 2003364 Query 349552 GGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATAT 349588 ||||||| ||||||||||||||||| ||||||||| Sbjct 2003363 GGTTTTAACCAAAATGAAGGAAATTGCAGAAGCATAT 2003327 >seq220 Length=9331205 Score = 138 bits (152), Expect = 3e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| | | | || |||||||| ||||| ||||| || || || || || || Sbjct 1328435 CATACCACCCCTCAGGCGCAGCACAAGATGCAGAGTGGACTCCTTCTGGATGTTGTAGTC 1328494 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | || ||||| ||||| || || || ||||||||||| | | ||||| ||||| Sbjct 1328495 AGACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCAGCAAAGATCAACCCCTGCTGGTCAGG 1328554 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || || || ||||| ||||| | ||| || || Sbjct 1328555 GGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATAGTATCGCTGGGCTC 1328614 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| ||||| || | ||||| || || || || || ||||| |||||||| Sbjct 1328615 AACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1328665 Score = 132 bits (146), Expect = 1e-25 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| | | | || |||||||| ||||| || || || || || || || || Sbjct 1328663 CATACCACCCCTCAGGCGCAGCACAAGATGCAGAGTGGATTCCTTCTGGATGTTGTAGTC 1328722 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | || ||||||||||| || || || ||||| ||||| || | ||||| ||||| Sbjct 1328723 AGACAGGGTGCGCCCATCTTCCAGCTGCTTCCCAGCGAAGATCAGCCTCTGCTGGTCAGG 1328782 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || ||||| |||||||| || || || || || || ||||| | ||| || || Sbjct 1328783 GGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTC 1328842 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| || || || || || ||||| |||||||| Sbjct 1328843 GACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1328893 Score = 120 bits (132), Expect = 9e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| | | | || |||||||| || || || || || || || || || || Sbjct 1328207 CATACCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTC 1328266 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | | ||||||||||| || || || |||| ||||| || | ||||| || || Sbjct 1328267 AGACAGGGAGCGCCCATCTTCCAGCTGCTTCTCAGCGAAGATCAGCCTCTGCTGGTCTGG 1328326 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || || || ||||| ||||| | ||| |||||| Sbjct 1328327 GGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTTGGTTC 1328386 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| || || || || || ||||| |||||||| Sbjct 1328387 CACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1328437 Score = 102 bits (112), Expect = 2e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| | | | || |||||||| || || || || || || || || || || Sbjct 1327979 CATACCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTC 1328038 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | | ||||||||||| || || || |||| ||||| || | ||||| || || Sbjct 1328039 AGACAGGGAGCGCCCATCTTCCAGCTGCTTCTCAGCGAAGATCAGCCTCTGCTGGTCTGG 1328098 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || | || || ||||| ||||| | ||| || || Sbjct 1328099 GGGGATGCCCTCCTTGTCCTGGATCTGGGCCTTCACATTCTCAATGGTGTCACTGGGCTC 1328158 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| || || || || || ||| | |||||||| Sbjct 1328159 GACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACACAGATCTGCAT 1328209 Score = 98.7 bits (108), Expect = 3e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || |||||||| || || || || || || || || || ||||| | | ||||||||| Sbjct 1327770 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGAGCGCCCATCT 1327829 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || |||| ||||| || | ||||| || || || || || || || ||| Sbjct 1327830 TCCAGCTGCTTCTCAGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCC 1327889 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || | || || ||||| ||||| | ||| || || || || || || | ||| Sbjct 1327890 TGGATCTGGGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTC 1327949 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || ||| | |||||||| Sbjct 1327950 TTGCCAGTCAGGGTCTTCACACAGATCTGCAT 1327981 >seq26 Length=11430413 Score = 134 bits (148), Expect = 4e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || |||||||| || || ||||| || || || || || || || | || ||||| ||| Sbjct 3031548 AGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTGCGCCCGTCT 3031607 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || | |||||||| |||||||| ||||| || ||| Sbjct 3031608 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGAATGCCTTCCTTGTCC 3031667 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| ||||| | ||| || ||||| || || || | ||| Sbjct 3031668 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGAGTGATGGTC 3031727 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || || || |||||||| Sbjct 3031728 TTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 3031759 Score = 131 bits (144), Expect = 5e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || |||||||| || || ||||| || || || || || || || || || ||||| ||| Sbjct 3031320 AGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGCCCGTCT 3031379 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || | ||||| || || ||||| ||||| || ||| Sbjct 3031380 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGTGGAATGCCTTCCTTGTCC 3031439 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| ||||| | ||| || ||||| || || || | ||| Sbjct 3031440 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGAGTGATGGTC 3031499 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || || || |||||||| Sbjct 3031500 TTCCCTGTCAGGGTCTTCACGAAGATCTGCAT 3031531 Score = 120 bits (132), Expect = 9e-22 Identities = 152/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| || || || || || || || || || || || || || || ||||||||||| | Sbjct 3031781 CAAG-TGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGCCCATCTTCCA 3031839 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 | || || ||||||||||| || | ||||| || || ||||| || || || ||||| | Sbjct 3031840 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGCGGAATGCCCTCCTTGTCCTGGA 3031899 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || || || ||||| || || | |||| || ||||| || || || | ||||| | Sbjct 3031900 TCTTGGCCTTGACATTCTCGATGGTATCACTGGGCTCAACCTCTAGGGTGATGGTCTTCC 3031959 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || || ||||| |||||||| Sbjct 3031960 CTGTCAGGGTCTTCACAAAGATCTGCAT 3031987 Score = 116 bits (128), Expect = 1e-20 Identities = 152/209 (73%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| || || || || || || || || || || || || || || ||||| ||||| | Sbjct 3032009 CAAG-TGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGCCCGTCTTCCA 3032067 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 | || || ||||||||||| || | ||||| || || ||||| ||||| || ||||| | Sbjct 3032068 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGTGGAATGCCTTCCTTGTCCTGGA 3032127 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || || || ||||| ||||| | ||| || ||||| || || || | ||||| | Sbjct 3032128 TCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGAGTGATGGTCTTCC 3032187 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCATT 140738 | || || || || || || ||||||||| Sbjct 3032188 CTGTCAGGGTCTTCACGAAGATCTGCATT 3032216 >seq89 Length=7060200 Score = 89.7 bits (98), Expect = 2e-12 Identities = 129/180 (72%), Gaps = 3/180 (2%) Strand=Plus/Minus Query 349715 ACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTT 349774 || ||||| || ||||| ||||| || || || | ||| | | |||| || || || | Sbjct 6054397 ACAGCTGCTGCCATTGCCTATGGACTGGACAAGA-GAGAGGGCGAGAAGAACATCCTCGT 6054339 Query 349775 ATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATT 349834 ||| || | |||||||| ||||| ||||| || || || || |||| | ||| | Sbjct 6054338 GTTT--GACCTGGGTGGTGGAACTTTCGATGTCTCCCTCCTCACCATTGACAATGGAGTC 6054281 Query 349835 TTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGT 349894 ||||| ||| || ||| |||||| || || || ||||||||||| |||||| | ||| Sbjct 6054280 TTTGAGGTTGTGGCTACTAATGGTGACACTCACCTGGGTGGAGAAGACTTTGATCAGCGT 6054221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515181538518659