Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq53 116 3e-21 >seq53 Length=23484652 Score = 116 bits (128), Expect = 3e-21 Identities = 121/159 (76%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 111778 CCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACA 111837 || |||| ||| ||||||||||||||||| || || || ||||| || || ||||| Sbjct 22066702 CCTGTGACGTGGGCAATCATGTATGTGAGCAGTGAATAGCTGGCAATATTGAAAGGCACT 22066761 Query 111838 CCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACA 111897 ||||| ||||||||||| ||||| ||||| || || || || |||| | | | ||| Sbjct 22066762 CCTAGTCCCATATCTCCGGATCTCTGATAGAGTTGGCAAGACAGTTCACCATTTAGAACA 22066821 Query 111898 TAAAATTGACAAAGTACATGACAAGGAGGCAATGCCATC 111936 || || || ||||| |||| || |||||||| |||||| Sbjct 22066822 TAGAACTGGCAAAGGGCATGGCATGGAGGCAAAGCCATC 22066860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391927672530739