Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq392 95.1 1e-14 seq3752 89.7 6e-13 seq46 86.0 7e-12 seq230 82.4 8e-11 >seq392 Length=1466058 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| |||||||| | |||||| | ||||| ||||| ||||| || |||||||| Sbjct 1328522 GTGAAAATGTATCGAGGGCTGGCAGAGTCCTTCCCACCATGCAGCCTGGTGCCAAACTGC 1328463 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || ||||| || ||||||||||||||| |||||| || |||||||| || || | | Sbjct 1328462 CCGATGGGCTGCAGCAGGTTGAGGTTGTTGCTGCCCACAAAGTTCTGAGCTAAGTTGATA 1328403 Query 152149 ATCGT 152153 || || Sbjct 1328402 ATGGT 1328398 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||||||||| |||| ||| |||| ||||| |||||| || | || || || || Sbjct 1328522 GTGAAAATGTATCGAGGGCTGGCAGAGTCCTTCCCACCATGCAGCCTGGTGCCAAACTGC 1328463 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || | |||| || ||||| ||||||||| |||||||||||| ||||| ||||||| | Sbjct 1328462 CCGATGGGCTGCAGCAGGTTGAGGTTGTTGCTGCCCACAAAGTTCTGAGCTAAGTTGATA 1328403 Query 117425 ATCGT 117429 || || Sbjct 1328402 ATGGT 1328398 >seq3752 Length=30765690 Score = 89.7 bits (98), Expect = 6e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| || || | || |||||||| || || | ||||||| Sbjct 11115987 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTGAGTCCAGGCATCAGGCCCCTCTTCTTC 11116046 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | |||||| || ||| |||||||| |||||||||||||| || |||||||| Sbjct 11116047 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCA 11116106 Query 74892 AC 74893 || Sbjct 11116107 AC 11116108 >seq46 Length=16942903 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| || |||| ||| ||||||||||| ||||| ||| | ||||| || || Sbjct 4826579 GTGAAAATATAGCGAGGGCTGGCAGCATCCTTTCCACCGTGAAGCCTGGTACCAAACTGA 4826520 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | || | | || || | ||||| ||| |||||||| ||||||||||||||| Sbjct 4826519 CCAATAGGTTGTAGCAGATTAACATTGTTACTGCCAACAAAGTTCTGAGCCAAGTTGACA 4826460 Query 117425 ATCGT 117429 || || Sbjct 4826459 ATAGT 4826455 >seq230 Length=477728 Score = 82.4 bits (90), Expect = 8e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 53330 AGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAG 53389 ||||| |||||| || |||||||||||| ||||| |||||||| || || |||||| Sbjct 349470 AGCTGTTTCCTGCTGTGCATGAAGGATGACAGCATCGAGGGCATCTATGACACTCTCAAG 349411 Query 53390 GAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGG 53427 ||||||| | ||||||||| | | ||||| ||||| Sbjct 349410 CAGTGTGCTCTCATCTCCAAATCTGCTGGTGGGATCGG 349373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547190328729400