Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq105 214 2e-50 >seq105 Length=17183596 Score = 214 bits (236), Expect = 2e-50 Identities = 655/1002 (65%), Gaps = 38/1002 (4%) Strand=Plus/Minus Query 13608 GACTACGTGAACATGACGGCCGACTGCGTGGCCTTCGTGAAAGACAGGGGGTATCTCGTG 13667 |||||| |||||||||| ||||||| |||| | | || ||| ||| | Sbjct 3513343 GACTACCTGAACATGACAAAGGACTGCGGCAACTTCAAGGCGACCCGGCGGTTCATCGAG 3513284 Query 13668 AGGCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCAC 13727 || ||||||| |||||||| ||||| ||||| |||||||| || || |||||| || Sbjct 3513283 TTCCCACTGAGCCAGGAAGAGGCAGAGTTCCCCATTGCCTACTCCATGGTCATCCACGAC 3513224 Query 13728 AAGATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGC 13787 || || |||||||| ||||| |||||| | ||||||| ||||| |||||| ||||||| Sbjct 3513223 AAAATTGAGATGTTTGAGCGGCTCCTGCGATCCATCTATGCCCCTCAGAACATCTACTGT 3513164 Query 13788 GTCCACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGG 13847 |||||||| ||| |||||| | || ||| || ||| |||||||| Sbjct 3513163 GTCCACGTTGACAGCAAGTCTCCAGCTGACTTCCAGGAGGCCGTGCGGGCCATCGTAGCC 3513104 Query 13848 TGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGT 13907 |||||||| ||||| ||||| ||| ||| | ||||| || | ||||||| Sbjct 3513103 TGCTTCCCCAACGTCTTTGTGGCCAGCCGCCTGGAAAGTGTGGTCTATGCCTCCTGGTCC 3513044 Query 13908 CGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTG-----GACGCCTCCCCCGTCAAGT 13962 || |||||||| ||||||| ||||||| |||||| || |||| || | | Sbjct 3513043 CGGGTGCAGGCTGACCTCAACTGCATGCAGGACCTCTTGCAGAGGCCT-----GTGCAAT 3512989 Query 13963 GGAGGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCG 14022 || | ||| | |||||| || || | || ||||| |||||||||| ||||| | Sbjct 3512988 GGCGCTACATCCTCAACACCTGTGGCACTGATTTCCCCATCAAGACCAATGCTGAGATTG 3512929 Query 14023 TGCGGGCGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAG--AGCGAGGGCATGCCCAA 14080 | | || ||||||| ||| ||| ||||| | ||||| || || | | | | Sbjct 3512928 TCCATGCCCTGAAGGTCCTAAACGGGCAGAACAGCATGGAGTCAGAGAAGCCCTCGGC-- 3512871 Query 14081 CCACAAGCTGCACCGCATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGTGGTCAA 14140 | ||| | | | ||| ||||| || | || || | | || || Sbjct 3512870 CTTCAAACAGGAGCGCT---GGAAGTACCAT----TATAAAGTGGAGAAG--GTCATCTC 3512820 Query 14141 C---ACCGGCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGC 14197 | || | || | | || || || || || | ||| | ||||| || | || || || Sbjct 3512819 CCGGACAGCCACGCAGAAAGCGCCACCACCCCACAGCTTTCCCATGTTCACAGGCAATGC 3512760 Query 14198 TTACTTTGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCT 14257 ||| ||| |||||| ||||| || ||| | | || || || || || || | Sbjct 3512759 GTACATTGTGGTCACGCGGGATTTTGTGCAGCACATCTTCGAGAAC---CCCACAGCACA 3512703 Query 14258 GC---TCATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGT 14314 | || | | ||| | ||||||| |||||||||||||||||| | ||||||||| | Sbjct 3512702 GAGGTTCCTTGAGTGGGCCAAGGACACCTACAGCCCCGACGAGCACATCTGGGCCACCCT 3512643 Query 14315 GCAGAGAATGTACGGGACGCCCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGA 14374 | | ||| ||| ||| || | | || | | ||||| | || ||| || Sbjct 3512642 CAACCGCATGCCCGGCGTGCCGGGTGCCAGGCCTCAGAATGACAAGTTCCACCTCTCAGA 3512583 Query 14375 CATGTGGGCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGG 14434 |||| ||| || | | | ||||||||| | ||| ||||| || | || ||||| Sbjct 3512582 CATGAACGCCCTGGCCCGCCTGGTCAAGTGGGAGTACCTGGAGGGTGACACCAGCAAAGG 3512523 Query 14435 GGCCCTGTACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGG 14494 || | |||| ||| ||| ||||| ||| | | || ||||||| | |||| | || Sbjct 3512522 CGCGCCTTACCAGCCCTGCACCGGCAAGCACCAGCGCTCCGTCTGCATTTACGGGGCGGG 3512463 Query 14495 CGACGTGAAGTGGCTG-AAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGA--CGACGA 14551 |||| || ||| || ||| | | ||||| || |||||||||||||| | || Sbjct 3512462 CGACCTGGCCTGGATGCTCCAGCAGCAC-CACCTCTTGGCCAACAAGTTCGATCCTAC-- 3512406 Query 14552 GACGGACGAGTTCGCCGTGCGCTGTCTGGACGAGGACGTGCG 14593 | |||||| ||||| | | || || || ||| || |||| Sbjct 3512405 GGTGGACGATGTCGCCATCCAGTGCCTCGAGGAGCACCTGCG 3512364 Score = 199 bits (220), Expect = 5e-46 Identities = 614/939 (65%), Gaps = 38/939 (4%) Strand=Plus/Minus Query 13671 CCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAG 13730 || ||||||| |||||||| ||||| ||||| |||||||| || || |||||| |||| Sbjct 3503222 CCACTGAGCCAGGAAGAGGCAGAGTTCCCCATTGCCTACTCCATGGTCATCCACGACAAA 3503163 Query 13731 ATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTC 13790 || |||||||| ||||| |||||| | ||||||| ||||| |||||| ||||||| ||| Sbjct 3503162 ATTGAGATGTTTGAGCGGCTCCTGCGATCCATCTATGCCCCTCAGAACATCTACTGTGTC 3503103 Query 13791 CACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGC 13850 ||||| ||| |||||| | || ||| || ||| |||||||| ||| Sbjct 3503102 CACGTTGACAGCAAGTCTCCAGCTGACTTCCAGGAGGCCGTGCGGGCCATCGTAGCCTGC 3503043 Query 13851 TTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGC 13910 ||||| ||||| ||||| ||| ||| | ||||| || | ||||||| || Sbjct 3503042 TTCCCCAACGTCTTTGTGGCCAGCCGCCTGGAAAGTGTGGTCTATGCCTCCTGGTCCCGG 3502983 Query 13911 GTGCAGGCCGACCTCAGCTGCATGTCGGACCTG-----GACGCCTCCCCCGTCAAGTGGA 13965 |||||||| ||||||| ||||||| |||||| || |||| || | ||| Sbjct 3502982 GTGCAGGCTGACCTCAACTGCATGCAGGACCTCTTGCAGAGGCCT-----GTGCAATGGC 3502928 Query 13966 GGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGC 14025 | ||| | |||||| || || | || ||||| |||||||||| ||||| || | Sbjct 3502927 GCTACATCCTCAACACCTGTGGCACTGATTTCCCCATCAAGACCAATGCTGAGATTGTCC 3502868 Query 14026 GGGCGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAG--AGCGAGGGCATGCCCAACCA 14083 || |||||| || || ||||| | ||||| || || | | | | | Sbjct 3502867 ATGCCCTGAAGATGCTAAAGGGGCAGAACAGCATGGAGTCAGAGAAGCCCTCGGC--CTT 3502810 Query 14084 CAAGCTGCACCGCATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGTGGTCAAC-- 14141 ||| | | | ||| ||||| || | || || | | || || | Sbjct 3502809 CAAACAGGAGCGCT---GGAAGTACCAT----TATAAAGTGGAGAAG--GTCATCTCCCG 3502759 Query 14142 -ACCGGCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTA 14200 || | || | | || || || || || | ||| | ||||| || | || || || || Sbjct 3502758 GACAGCCACGCAGAAAGCGCCACCACCCCACAGCTTTCCCATGTTCACAGGCAATGCGTA 3502699 Query 14201 CTTTGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCTGC- 14259 | ||| |||||| ||||| || ||| | | || || || || || || | | Sbjct 3502698 CATTGTGGTCACGCGGGATTTTGTGCAGCACATCTTCGAGAAC---CCCACAGCACAGAG 3502642 Query 14260 --TCATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCA 14317 || | | ||| | ||||||| |||||||||||||||||| | ||||||||| | | Sbjct 3502641 GTTCCTTGAGTGGGCCAAGGACACCTACAGCCCCGACGAGCACATCTGGGCCACCCTCAA 3502582 Query 14318 GAGAATGTACGGGACGCCCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGACAT 14377 | ||| ||| ||| || | | || | | ||||| | || ||| ||||| Sbjct 3502581 CCGCATGCCCGGCGTGCCGGGTGCCAGGCCTCAGAATGACAAGTTCCACCTCTCAGACAT 3502522 Query 14378 GTGGGCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGC 14437 | ||| || | | | ||||||||| | ||| ||||| || | || ||||| || Sbjct 3502521 GAACGCCCTGGCCCGCCTGGTCAAGTGGGAGTACCTGGAGGGTGACACCAGCAAAGGCGC 3502462 Query 14438 CCTGTACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGA 14497 | |||| ||| ||| ||||| ||| | | || ||||||| | |||| | ||||| Sbjct 3502461 GCCTTACCAGCCCTGCACCGGCAAGCACCAGCGCTCCGTCTGCATTTACGGGGCGGGCGA 3502402 Query 14498 CGTGAAGTGGCTG-AAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGA--CGACGAGAC 14554 | || ||| || ||| | | ||||| || |||||||||||||| | || | Sbjct 3502401 CCTGGCCTGGATGCTCCAGCAGCAC-CACCTCTTGGCCAACAAGTTCGATCCTAC--GGT 3502345 Query 14555 GGACGAGTTCGCCGTGCGCTGTCTGGACGAGGACGTGCG 14593 |||||| ||||| | | || || || ||| || |||| Sbjct 3502344 GGACGATGTCGCCATCCAGTGCCTCGAGGAGCACCTGCG 3502306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658708296897280