Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq73 113 4e-20 seq53 111 1e-19 >seq73 Length=26452829 Score = 113 bits (124), Expect = 4e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || |||||||||||||| ||||| |||||||| | || || || ||||| ||| Sbjct 13458105 GTGGTGGAGGAGCTCTTCCGAGACGGGGTTAACTGGGGCAGGATCGTGGCCTTCTTCGAG 13458046 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || || ||||| ||||| ||||| |||||||| | | || | ||||||| |||| | Sbjct 13458045 TTCGGCGGTGTGATGTGCGTGGAGAGCGTCAACCGGGAGATGTCTCCCCTCGTGGACAGC 13457986 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||||| |||||||| || Sbjct 13457985 ATCGCCGCCTGGATGACCGA 13457966 >seq53 Length=23484652 Score = 111 bits (122), Expect = 1e-19 Identities = 121/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 |||||||| | ||| |||||||||||||| | || |||||||| | ||| ||||| Sbjct 22066699 AGCCCTGTGACGTGGGCAATCATGTATGTGAGCAGTGAATAGCTGGCAATATTGAAAGGC 22066758 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 || || || ||||| ||| | |||||||| || | ||||||||| || || || ||| | Sbjct 22066759 ACTCCTAGTCCCATATCTCCGGATCTCTGATAGAGTTGGCAAGACAGTTCACCATTTAGA 22066818 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 ||||| ||||| | | | || |||||||||| | |||| Sbjct 22066819 ACATAGAACTGGCAAAGGGCATGGCATGGAGGCAAAGCCAT 22066859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414457841960692