Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq220 170 4e-37 seq26 161 2e-34 >seq220 Length=9331205 Score = 170 bits (188), Expect = 4e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || |||||||| || || |||||||| || || | ||||| | |||||| Sbjct 1328682 AGCACAAGATGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 1328741 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || |||||||| || | || |||||||| || | |||||||| ||| Sbjct 1328742 TCCAGCTGCTTCCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCC 1328801 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| || ||||||||| | || |||||||| ||||| ||| Sbjct 1328802 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTC 1328861 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 1328862 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1328893 Score = 154 bits (170), Expect = 3e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || ||||| || || |||||||| || || | ||||| | || ||| Sbjct 1328910 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCT 1328969 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| || | || ||||| || || | || ||||||||| Sbjct 1328970 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATACCCTCCTTGTCC 1329029 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| || || || ||| | || |||||||| ||||| ||| Sbjct 1329030 TGGATCTTGGCCTTCACGTTCTCAATAGTATCACTGGGCTCGACCTCGAGGGTGATGGTC 1329089 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || ||||| ||||| | |||||| || Sbjct 1329090 TTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 1329124 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || ||||| || || |||||||| || || | |||| | |||||| Sbjct 1328226 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGAGCGCCCATCT 1328285 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| | |||||||| || | || ||||| || || | || ||||||||| Sbjct 1328286 TCCAGCTGCTTCTCAGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCC 1328345 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || ||||||||| ||| |||||||| ||||| ||| Sbjct 1328346 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTTGGTTCCACCTCGAGGGTGATGGTC 1328405 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 1328406 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1328437 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || ||||||||||| || |||||||| || || | ||||| | || ||| Sbjct 1328454 AGCACAAGATGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCT 1328513 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| | | || |||||||| || | || ||||||||| Sbjct 1328514 TCCAGCTGCTTCCCAGCAAAGATCAACCCCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 1328573 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || || || || | |||||||| || ||||| ||| Sbjct 1328574 TGGATCTTGGCCTTCACATTCTCAATAGTATCGCTGGGCTCAACCTCAAGGGTGATGGTC 1328633 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 1328634 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1328665 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || ||||| || || |||||||| || || | |||| | |||||| Sbjct 1327770 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGAGCGCCCATCT 1327829 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| | |||||||| || | || ||||| || || | || ||||||||| Sbjct 1327830 TCCAGCTGCTTCTCAGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCC 1327889 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||||| ||||| || || ||||||||| | || |||||||| ||||| ||| Sbjct 1327890 TGGATCTGGGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTC 1327949 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||| | | |||||| Sbjct 1327950 TTGCCAGTCAGGGTCTTCACACAGATCTGCAT 1327981 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || ||||| || || |||||||| || || | |||| | |||||| Sbjct 1327998 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGAGCGCCCATCT 1328057 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| | |||||||| || | || ||||| || || | || ||||||||| Sbjct 1328058 TCCAGCTGCTTCTCAGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCC 1328117 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||||| ||||| || || ||||||||| | || |||||||| ||||| ||| Sbjct 1328118 TGGATCTGGGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTC 1328177 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||| | | |||||| Sbjct 1328178 TTGCCAGTCAGGGTCTTCACACAGATCTGCAT 1328209 >seq26 Length=11430413 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || |||||||| || |||||||| || || | ||||| | || ||| Sbjct 3031548 AGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTGCGCCCGTCT 3031607 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || || || ||||||| |||||||||||| Sbjct 3031608 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGAATGCCTTCCTTGTCC 3031667 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || ||||||||| | |||||||| |||||||| ||| Sbjct 3031668 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGAGTGATGGTC 3031727 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | |||||| Sbjct 3031728 TTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 3031759 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || |||||||| || |||||||| || || | | ||| | || ||| Sbjct 3031320 AGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGCCCGTCT 3031379 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || ||||| || |||| |||||||||||| Sbjct 3031380 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGTGGAATGCCTTCCTTGTCC 3031439 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || ||||||||| | |||||||| |||||||| ||| Sbjct 3031440 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGAGTGATGGTC 3031499 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | |||||| Sbjct 3031500 TTCCCTGTCAGGGTCTTCACGAAGATCTGCAT 3031531 Score = 154 bits (170), Expect = 3e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || ||||| || || |||||||| || || | | ||| | || ||| Sbjct 3032004 AGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGCCCGTCT 3032063 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || ||||| || |||| |||||||||||| Sbjct 3032064 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGTGGAATGCCTTCCTTGTCC 3032123 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || ||||||||| | |||||||| |||||||| ||| Sbjct 3032124 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGAGTGATGGTC 3032183 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || ||||| || || | ||||||||| Sbjct 3032184 TTCCCTGTCAGGGTCTTCACGAAGATCTGCATTTT 3032218 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || ||||| || || |||||||| || || | | ||| | |||||| Sbjct 3031776 AGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGCCCATCT 3031835 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || ||||| || |||| || ||||||||| Sbjct 3031836 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGCGGAATGCCCTCCTTGTCC 3031895 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || |||||||| ||| | |||||||| || ||||| ||| Sbjct 3031896 TGGATCTTGGCCTTGACATTCTCGATGGTATCACTGGGCTCAACCTCTAGGGTGATGGTC 3031955 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 3031956 TTCCCTGTCAGGGTCTTCACAAAGATCTGCAT 3031987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159096261813845