Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq53 93.3 3e-14 seq508 82.4 6e-11 >seq53 Length=23484652 Score = 93.3 bits (102), Expect = 3e-14 Identities = 121/162 (75%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCT-GTGCTCGAA 30075 || |||||||||||||| || || || ||||||| || ||||| || || ||||| ||| Sbjct 22069867 AAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATCCCCCTCCTCTCTGGTGCT-GAA 22069925 Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135 ||| ||| |||| || || | || || || || ||||| |||||||| ||||| | Sbjct 22069926 ACCCTGCTTATCCAGGAACTCACGTGATCCATTAGCATCCCAAATCTTTACACCCTTTGC 22069985 Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAG 30177 || |||||||| | ||||| || || || || || ||||| Sbjct 22069986 AGACAGCTCTTTAGCATTTGTAGAACC-CT-ACAAAACACAG 22070025 >seq508 Length=3130527 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || ||||||| |||||| |||| || | |||||| | | || | |||||| || || Sbjct 317257 TTGAGCTCCCGGCTGAGCACTATATTAATTCTGTCTTTTAATGGACGATTCTTCTCAGGA 317316 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| || ||| |||||||||||| | ||||| |||||| Sbjct 317317 ATGGAGAACCAGGTTTTTTTACCCATTATCAGTGCATTCTGTTTACCT 317364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406144622222158