Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq307 125 6e-24 seq3752 107 2e-18 >seq307 Length=12913425 Score = 125 bits (138), Expect = 6e-24 Identities = 109/134 (81%), Gaps = 1/134 (1%) Strand=Plus/Minus Query 4562 ATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACC 4621 || || |||| |||||||||| || |||||||||||||| || | ||| |||||||| || Sbjct 4487519 ATTCATACCT-CGTCTCTGCTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCC 4487461 Query 4622 TCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGC 4681 ||| || || |||||||| || | ||||| || ||||||||||| || ||||| || || Sbjct 4487460 TCTTTTCTTCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACCGC 4487401 Query 4682 GGCAAACGCTACTA 4695 ||||| ||||||| Sbjct 4487400 TGCAAAAGCTACTA 4487387 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| || || ||||| || || || || |||||||| |||||||||||||| || ||| Sbjct 4485293 TCTTTGATGTAGGTGTCAATAAGCAGACTGTACATTTCTGAATGTATATTTTCCATGGCA 4485234 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 ||||| || || || || || | ||||||||| | ||| ||||| Sbjct 4485233 ATCTGGAAGCCATAGAAACAACGAGCTTCTGTGATTTGTACTTC 4485190 >seq3752 Length=30765690 Score = 107 bits (118), Expect = 2e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| ||||| || || || || | ||| ||||| | || ||||| || Sbjct 11115987 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTGAGTCCAGGCATCAGGCCCCTCTTCTTC 11116046 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 |||||||||||||| ||||| || || |||||||| |||||||| || || ||||| || Sbjct 11116047 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCA 11116106 Query 4692 AC 4693 || Sbjct 11116107 AC 11116108 Score = 96.9 bits (106), Expect = 3e-15 Identities = 100/130 (77%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 4922 AAATCTTTCT-ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 ||| |||||| || | |||||| ||||| || || || |||||||||||||| |||| || Sbjct 11120365 AAAGCTTTCTCACCAGGTTTTCATTTACAATTCCATCGCTGGCTGCAAAAAATGCCAGAA 11120424 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 |||| || |||||||| | ||| || | || || || |||||||| || | || || | Sbjct 11120425 CATGCGAGATAAAGTATTTTTCATCTGCTTTCAGCTTGTTCCAGTGAGGAAGGTCCTTTG 11120484 Query 5041 TTAAATCAAC 5050 |||||||| Sbjct 11120485 ACAAATCAAC 11120494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427030066884749