Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq26 127 5e-24 seq220 123 6e-23 >seq26 Length=11430413 Score = 127 bits (140), Expect = 5e-24 Identities = 158/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| || || ||||| || ||||||||||| |||| || || | ||| ||| Sbjct 3031320 AGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGCCCGTCT 3031379 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| |||||||||||||| | | || |||||||| || Sbjct 3031380 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGTGGAATGCCTTCCTTGTCC 3031439 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || |||||| |||| | | |||| ||| ||| || || ||||| || Sbjct 3031440 TGGATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCAACCTCCAGAGTGATG 3031496 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || ||||||||||||| |||||| Sbjct 3031497 GTCTTCCCTGTCAGGGTCTTCACGAAGATCTGCAT 3031531 Score = 118 bits (130), Expect = 2e-21 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| || || ||||| || ||||||||||| || | | || | ||| ||| Sbjct 3031548 AGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTGCGCCCGTCT 3031607 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| ||||||||||| || | | || |||||||| || Sbjct 3031608 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGAATGCCTTCCTTGTCC 3031667 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || |||||| |||| | | |||| ||| ||| || || ||||| || Sbjct 3031668 TGGATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCAACCTCCAGAGTGATG 3031724 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || ||||||||||||| |||||| Sbjct 3031725 GTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 3031759 Score = 118 bits (130), Expect = 2e-21 Identities = 156/214 (73%), Gaps = 7/214 (3%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || || || || ||||||||||| |||| || || | ||| ||||| | Sbjct 3032009 CAAG-TGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGCCCGTCTTCCA 3032067 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || || ||||| |||||||||||||| | | || |||||||| || || | Sbjct 3032068 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGTGGAATGCCTTCCTTGTCCTGGA 3032127 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTT 152073 | || |||||| |||| | | |||| ||| ||| || || ||||| || || | Sbjct 3032128 TCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCAACCTCCAGAGTGATGGTCT 3032184 Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | || || || ||||||||||||| ||||||||| Sbjct 3032185 TCCCTGTCAGGGTCTTCACGAAGATCTGCATTTT 3032218 Score = 104 bits (114), Expect = 5e-17 Identities = 151/211 (72%), Gaps = 7/211 (3%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || || || || ||||||||||| |||| || || | ||||||||| | Sbjct 3031781 CAAG-TGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGCCCATCTTCCA 3031839 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || || ||||| |||||||||||||| | || || || ||||| || || | Sbjct 3031840 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGCGGAATGCCCTCCTTGTCCTGGA 3031899 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTT 152073 | || |||||| |||| | | | || ||| ||| || || || || || || | Sbjct 3031900 TCTTGGCCTTGACATTCTCGATGGTATC---ACTGGGCTCAACCTCTAGGGTGATGGTCT 3031956 Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || || |||||||| |||| |||||| Sbjct 3031957 TCCCTGTCAGGGTCTTCACAAAGATCTGCAT 3031987 >seq220 Length=9331205 Score = 123 bits (136), Expect = 6e-23 Identities = 157/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| ||||| || || || ||||||||||| || | | || | ||||||| Sbjct 1328682 AGCACAAGATGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 1328741 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||||| |||||||| |||||||||||||| | | ||| |||||||| || Sbjct 1328742 TCCAGCTGCTTCCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCC 1328801 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || || |||| | | |||| ||| ||| || || || || || Sbjct 1328802 TGGATCTTGGCCTTCACGTTCTCAATGGTGTC---ACTGGGCTCGACCTCGAGGGTGATG 1328858 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || |||||||| |||| |||||| Sbjct 1328859 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1328893 Score = 105 bits (116), Expect = 2e-17 Identities = 153/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| || || || || || ||||||||||| || | | | | ||||||| Sbjct 1328226 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGAGCGCCCATCT 1328285 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| | |||||||| |||||||||||||| | | ||| || ||||| || Sbjct 1328286 TCCAGCTGCTTCTCAGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCC 1328345 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || ||| |||| | | |||| ||| || || || || || || Sbjct 1328346 TGGATCTTGGCCTTCACATTCTCAATGGTGTC---ACTTGGTTCCACCTCGAGGGTGATG 1328402 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || |||||||| |||| |||||| Sbjct 1328403 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1328437 Score = 104 bits (114), Expect = 5e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| ||||| ||||| || ||||||||||| || | | || | ||| ||| Sbjct 1328454 AGCACAAGATGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCT 1328513 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||||| || ||||| | || ||||||||| | | ||| || ||||| || Sbjct 1328514 TCCAGCTGCTTCCCAGCAAAGATCAACCCCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 1328573 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || ||| |||| | | || ||| || ||||| || || || Sbjct 1328574 TGGATCTTGGCCTTCACATTCTCAATAGTATCGCTGGGCTCAACCTCAAGGGTGATGGTC 1328633 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || |||||||| |||| |||||| Sbjct 1328634 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1328665 Score = 100 bits (110), Expect = 7e-16 Identities = 152/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| || || || || || ||||||||||| || | | | | ||||||| Sbjct 1327770 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGAGCGCCCATCT 1327829 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| | |||||||| |||||||||||||| | | ||| || ||||| || Sbjct 1327830 TCCAGCTGCTTCTCAGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCC 1327889 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || | || ||| |||| | | |||| ||| ||| || || || || || Sbjct 1327890 TGGATCTGGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCGACCTCGAGGGTGATG 1327946 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || |||||||| ||| |||||| Sbjct 1327947 GTCTTGCCAGTCAGGGTCTTCACACAGATCTGCAT 1327981 Score = 100 bits (110), Expect = 7e-16 Identities = 152/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| || || || || || ||||||||||| || | | | | ||||||| Sbjct 1327998 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGAGCGCCCATCT 1328057 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| | |||||||| |||||||||||||| | | ||| || ||||| || Sbjct 1328058 TCCAGCTGCTTCTCAGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCC 1328117 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || | || ||| |||| | | |||| ||| ||| || || || || || Sbjct 1328118 TGGATCTGGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCGACCTCGAGGGTGATG 1328174 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || |||||||| ||| |||||| Sbjct 1328175 GTCTTGCCAGTCAGGGTCTTCACACAGATCTGCAT 1328209 Score = 100 bits (110), Expect = 7e-16 Identities = 159/227 (70%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | || |||||||| || || || || || ||||||||||| || | | || Sbjct 1328901 CTGAGACGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTG 1328960 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | ||| ||||| || || || |||||||| |||||||||||||| | | ||| || Sbjct 1328961 CGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATACCC 1329020 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 ||||| || || || || || || |||| | | || ||| ||| || || Sbjct 1329021 TCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATAGTATC---ACTGGGCTCGACCTCG 1329077 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || || ||||| || || |||||||| |||| |||||| || Sbjct 1329078 AGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 1329124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153765318166263