Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq19 185 1e-41 seq89 132 7e-26 >seq19 Length=5382850 Score = 185 bits (204), Expect = 1e-41 Identities = 186/242 (77%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||||| ||||||||||||||| ||||| ||| ||| |||||||| || |||||||| Sbjct 2220604 ATGAGTCTAGTGGTCTGGAACAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAGG 2220663 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 | || || |||| |||||||||||| ||||| || ||||| |||||||| | || || Sbjct 2220664 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATTGTGGCATACATCATCAAGCCTGGG 2220723 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||| ||||| |||| || ||||||| | ||| || ||| || || | ||||| Sbjct 2220724 ACCAAACCAAACACCTCCTGCCCGACAGAAAACTGCAAGTGTTCAGGTACGTGAGGAGGG 2220783 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 |||||||| | |||| ||| || |||| || ||||||||||| || ||||||||| Sbjct 2220784 TAGATCATTTCTGCCTGAGTGTCCTTCACCGTTGGTGGATACATTTCTCCATCAATCATC 2220843 Query 9484 TG 9485 || Sbjct 2220844 TG 2220845 Score = 145 bits (160), Expect = 1e-29 Identities = 211/298 (71%), Gaps = 0/298 (0%) Strand=Plus/Plus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| || | || ||||| || || || ||| | |||| || ||| | | || Sbjct 2218286 GGAAAGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 2218345 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||| || | || ||||| | ||| ||||||||||| |||||||||||| | |||| Sbjct 2218346 TATTGATTATTTCAAAGCCCACTTTTCCACCGAAGGTGCTAGGCTTCCAGTACTCAGGGG 2218405 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 ||||||| | || |||| || ||||| || |||||||| || || | ||| | || Sbjct 2218406 AGCAGATAGCATTTCCCATCAGTCCTTTCAGCGAGAACGGTGCTCCAATCTCCACCATCG 2218465 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 | ||||| |||||||| || || |||||||| |||| | || | ||||||||||| Sbjct 2218466 TTTCACCAAAGATGGCACCTGGTCGTGGCTTTTCTACCAGAAGGCCTGGGTACAGCTCCA 2218525 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT 8586 || || | |||||| ||||| | || || || || || || ||||||||||| Sbjct 2218526 TGGCATCAATGTCTCCATAAAGCTCTTCCAGCTCAGCTGCCATTTCTTTTTCTCCTGT 2218583 >seq89 Length=7060200 Score = 132 bits (146), Expect = 7e-26 Identities = 181/253 (72%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||| | |||||| |||| |||||||| || |||||||| ||||| ||||| Sbjct 5098211 TCACCGATGAGGATGAGACGAGCTGTCTGGAAGAGCTGCTCGTCGCTCCAGGTGGGATGC 5098152 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || |||||||| | ||||| |||| |||||| || | ||||||| ||||||||||| Sbjct 5098151 TCCTGTTTCAGGATGTCGCAGACCCGGTTGTGCTCGCGCAGCCAGAGCGTGGCGTACATG 5098092 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 |||||| || | ||| ||||| |||| || || | ||||| || | | | ||| Sbjct 5098091 CAGAGCCCCGGCAGCAGCCCAAACACCTCCTGCCCCATCGCCAGCTGCTTCTCCTTGGGG 5098032 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCA 9471 || | || || |||| |||||| ||| | | | ||||| |||||| |||| || Sbjct 5098031 ACGGCAGGCGGGTAGACCATGTGAACCGGAGCATGGGTGACCATGGGGGGGTACACCTCT 5097972 Query 9472 CCGTCAATCATCT 9484 || || | || || Sbjct 5097971 CCATCCACCACCT 5097959 Score = 98.7 bits (108), Expect = 1e-15 Identities = 164/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 |||| |||||| | || || || ||||||||||| ||||| ||||||||| | |||| Sbjct 5100505 TCTTAACGATCTCAAAGCCAGTCTCCCCGCCGAAGGTACTGGGTTTCCAGTACTCTGGGG 5100446 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 |||||| | ||| | | || || || ||||| || ||||| || | ||| | |||| Sbjct 5100445 AGCAGACGGGGTTTCCAAAAAGCCCCTTCAGGGAAAAGGGAGCTCCAATCTCCACCATGC 5100386 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 | || || || || | ||||| | || || || | || || || | || | ||||| Sbjct 5100385 TTTCCCCAAAAATACCATTGGGTTGAGGTTTCTCAAGCAGCAAGCCCGGATAAAACTCCA 5100326 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 ||| || | |||||| || || || || || || || |||| | ||||||| Sbjct 5100325 GAGCATCAATGTCTCCATACAGCTCCTCCAGCTCTGCCGCCTTCTCTTCCTCTCCTG 5100269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716843169517120