Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq220 145 2e-29 seq26 136 1e-26 >seq220 Length=9331205 Score = 145 bits (160), Expect = 2e-29 Identities = 158/208 (76%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || |||||||||||||| || || ||| Sbjct 1328890 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGA--GCCCAGTG 1328833 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| |||||||| || ||||| ||||| || ||||| ||||| || ||||||| Sbjct 1328832 ACACCATTGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCTGACCAGC 1328773 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || |||||||| || || ||||| |||||||| | || || | || || ||| Sbjct 1328772 AGAGGCTGATCTTCGCTGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 1328713 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || ||||| || ||||||||||| Sbjct 1328712 TCCAGAAGGAATCCACTCTGCATCTTGT 1328685 Score = 132 bits (146), Expect = 1e-25 Identities = 163/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || || ||||| || || || || || || |||||||||||||| | ||| || | Sbjct 1329118 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCG--AGCCCAGTG 1329061 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | || || |||||||| || ||||| |||||||| || || ||||| || ||||||| Sbjct 1329060 ATACTATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCAGACCAGC 1329001 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || |||||||| || || ||||| ||||| || | || || | || || ||| Sbjct 1329000 AGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAACA 1328941 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || ||||| || || |||||||| || | |||||| Sbjct 1328940 TCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGTCTCAGA 1328900 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || || || || || || |||||||||||||||||| ||| Sbjct 1328434 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTGGAACCAAGTGAC 1328375 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || || ||||| |||||||| || || ||||| || |||||||| Sbjct 1328374 ACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAG 1328315 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || |||||||| | || ||||| |||||||| | | || | || || ||| || Sbjct 1328314 AGGCTGATCTTCGCTGAGAAGCAGCTGGAAGATGGGCGCTCCCTGTCTGACTACAACATC 1328255 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| || || |||||||| Sbjct 1328254 CAGAAGGAATCCACCCTCCATCTTGT 1328229 Score = 120 bits (132), Expect = 7e-22 Identities = 147/199 (74%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--GACACCATCG 177990 ||||| || || || || || || |||||||||||||| | ||| || |||||||| | Sbjct 1327969 GTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCG--AGCCCAGTGACACCATTG 1327912 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 |||| || || |||| |||||||| || || ||||| || |||||||| | || | Sbjct 1327911 AGAATGTGAAGGCCCAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGAGGCTGA 1327852 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 ||||||| | || ||||| |||||||| | | || | || || ||| |||| || | Sbjct 1327851 TCTTCGCTGAGAAGCAGCTGGAAGATGGGCGCTCCCTGTCTGACTACAACATCCAGAAGG 1327792 Query 178111 AATCAACACTGCATCTTGT 178129 |||| || || |||||||| Sbjct 1327791 AATCCACCCTCCATCTTGT 1327773 Score = 120 bits (132), Expect = 7e-22 Identities = 147/199 (74%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--GACACCATCG 177990 ||||| || || || || || || |||||||||||||| | ||| || |||||||| | Sbjct 1328197 GTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCG--AGCCCAGTGACACCATTG 1328140 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 |||| || || |||| |||||||| || || ||||| || |||||||| | || | Sbjct 1328139 AGAATGTGAAGGCCCAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGAGGCTGA 1328080 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 ||||||| | || ||||| |||||||| | | || | || || ||| |||| || | Sbjct 1328079 TCTTCGCTGAGAAGCAGCTGGAAGATGGGCGCTCCCTGTCTGACTACAACATCCAGAAGG 1328020 Query 178111 AATCAACACTGCATCTTGT 178129 |||| || || |||||||| Sbjct 1328019 AATCCACCCTCCATCTTGT 1328001 Score = 109 bits (120), Expect = 1e-18 Identities = 150/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || |||||||| ||||| || || ||| Sbjct 1328662 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGA--GCCCAGCG 1328605 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | || || ||||| || || ||||| |||||||| || || ||||| || ||||||| Sbjct 1328604 ATACTATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGC 1328545 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| || || || ||||| ||||| || | || || | || || ||| Sbjct 1328544 AGGGGTTGATCTTTGCTGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAACA 1328485 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||||||||| Sbjct 1328484 TCCAGAAGGAGTCCACTCTGCATCTTGT 1328457 >seq26 Length=11430413 Score = 136 bits (150), Expect = 1e-26 Identities = 166/222 (75%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || ||||| || || ||||| || ||||| || || ||| Sbjct 3031528 CAGATCTTCGTGAAGACCCTGACAGGGAAGACCATCACTCTGGAGGTTGA--GCCCAGTG 3031471 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| ||||| ||||| |||||||| ||||| || || || ||||||| Sbjct 3031470 ACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCACCCGACCAGC 3031411 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAAC 178100 | | || ||||| || || || ||||| ||||| || | || |||| |||| || ||| Sbjct 3031410 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCAC-CTTGTCCGACTACAAC 3031352 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || ||||||||||| || | || ||| Sbjct 3031351 ATCCAGAAGGAGTCCACCCTGCATCTTGTGCTGCGTCTGAGA 3031310 Score = 132 bits (146), Expect = 1e-25 Identities = 163/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || ||||| || || ||||| || ||||| || || ||| Sbjct 3031756 CAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACTCTGGAGGTTGA--GCCCAGTG 3031699 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| ||||| ||||| |||||||| ||||| || ||||| || |||| Sbjct 3031698 ACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCAGATCAGC 3031639 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| ||||| || | || || | || || ||| Sbjct 3031638 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCAGACTACAACA 3031579 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || ||||||||||| || | || ||| Sbjct 3031578 TCCAGAAGGAGTCCACCCTGCATCTTGTGCTGCGTCTGAGA 3031538 Score = 129 bits (142), Expect = 1e-24 Identities = 157/208 (75%), Gaps = 7/208 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || ||||| || || |||||||| ||||| || || ||| Sbjct 3031984 CAGATCTTTGTGAAGACCCTGACAGGGAAGACCATCACCCTAGAGGTTGA--GCCCAGTG 3031927 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | ||||||||||| ||||| ||||| |||||||| || || || || || ||||||| Sbjct 3031926 ATACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCCGACCAGC 3031867 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAAC 178100 | | || ||||| || || || ||||| |||||||| | || |||| |||| || ||| Sbjct 3031866 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCAC-CTTGTCCGACTACAAC 3031808 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTG 178128 |||| || ||||| || ||||| |||| Sbjct 3031807 ATCCAGAAGGAATCCACCCTGCA-CTTG 3031781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203673318209082