Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq1788 91.5 3e-13 seq1227 91.5 3e-13 seq1178 91.5 3e-13 seq396 91.5 3e-13 seq271 91.5 3e-13 seq19 91.5 3e-13 seq4641 89.7 1e-12 seq29 89.7 1e-12 seq2477 87.8 4e-12 seq1455 87.8 4e-12 seq1425 87.8 4e-12 seq1329 87.8 4e-12 seq833 87.8 4e-12 SEQ19147 86.0 1e-11 SEQ11837 86.0 1e-11 seq4876 84.2 5e-11 seq4783 84.2 5e-11 seq4225 84.2 5e-11 seq1048 84.2 5e-11 seq598 84.2 5e-11 seq583 84.2 5e-11 >seq1788 Length=17426 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 8830 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 8889 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 8890 CCCCACGTTGGGC 8902 >seq1227 Length=80129 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 62968 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 62909 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 62908 CCCCACGTTGGGC 62896 >seq1178 Length=99940 Score = 91.5 bits (100), Expect = 3e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 165702 AAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGG 165761 ||||| ||||| ||||||||||||||||||| ||||| ||||||| |||||||| Sbjct 45558 AAACGAGAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGG 45617 Query 165762 GTTCGAGCCCCACGATGGGC 165781 |||||||||||||| ||||| Sbjct 45618 GTTCGAGCCCCACGTTGGGC 45637 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 23834 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 23893 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 23894 CCCACGTTGGGC 23905 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 42604 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 42663 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 42664 CCCACGTTGGGC 42675 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 46661 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 46720 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 46721 CCCACGTTGGGC 46732 >seq396 Length=818593 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 168054 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 167995 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 167994 CCCCACGTTGGGC 167982 >seq271 Length=1061280 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 858476 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 858417 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 858416 CCCCACGTTGGGC 858404 >seq19 Length=3254205 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 336263 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 336204 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 336203 CCCCACGTTGGGC 336191 >seq4641 Length=7051 Score = 89.7 bits (98), Expect = 1e-12 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||| | ||||||||||||||| Sbjct 6313 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATGTCAGGGTCGTGGGTTCGAG 6372 Query 165769 CCCCACGATGGGCA 165782 ||||||| |||||| Sbjct 6373 CCCCACGTTGGGCA 6386 >seq29 Length=3003393 Score = 89.7 bits (98), Expect = 1e-12 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||| || ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 2648947 TGCGCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 2649006 Query 165769 CCCCACGATGGGCA 165782 ||||||| |||||| Sbjct 2649007 CCCCACGTTGGGCA 2649020 >seq2477 Length=11436 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||| |||||| ||||| ||||||| ||||||||||||||| Sbjct 6981 TGCCCGGCTAGCTCAGTCGATAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 7040 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 7041 CCCCACGTTGGGC 7053 >seq1455 Length=30489 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| |||| ||||||| ||||||||||||||| Sbjct 312 TGCCCGGCTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCTCAGGGTCGTGGGTTCGAG 253 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 252 CCCCACGTTGGGC 240 >seq1425 Length=32839 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| |||||||| |||||| Sbjct 29339 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGATTCGAG 29398 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 29399 CCCCACGTTGGGC 29411 >seq1329 Length=48347 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| |||||||||||| || Sbjct 6437 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCAAG 6496 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 6497 CCCCACGTTGGGC 6509 >seq833 Length=306591 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 225599 TGCCCGGCTAGCTCAGTCGGTAGAGCATAAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 225540 Query 165769 CCCCACGATGGGC 165781 ||||| | ||||| Sbjct 225539 CCCCATGTTGGGC 225527 >SEQ19147 Length=1536 Score = 86.0 bits (94), Expect = 1e-11 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 || ||| ||||||||||||||||||| ||||| |||||||| ||||||||||||||| Sbjct 206 TGTCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTGAGGGTCGTGGGTTCGAG 265 Query 165769 CCCCACG 165775 ||||||| Sbjct 266 CCCCACG 272 >SEQ11837 Length=2330 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||| ||||||||||| Sbjct 1725 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTTGTGGGTTCGAG 1784 Query 165769 CCCCACGATGGG 165780 ||||||| |||| Sbjct 1785 CCCCACGTTGGG 1796 >seq4876 Length=6791 Score = 84.2 bits (92), Expect = 5e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 165711 CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCC 165770 |||| |||||||||||| |||||| ||||| ||||||| ||||||||||||||||| Sbjct 5756 CCCGGCTAGCTCAGTCGATAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGCC 5815 Query 165771 CCACGATGGGC 165781 ||||| ||||| Sbjct 5816 CCACGTTGGGC 5826 >seq4783 Length=6895 Score = 84.2 bits (92), Expect = 5e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 165706 GCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTC 165765 ||||||||| ||||||||||||||||||| ||| ||||||| |||||||||||| Sbjct 5923 GCTTGCCCGGCTAGCTCAGTCGGTAGAGCATGGGACACTTAATCTCAGGGTCGTGGGTTC 5982 Query 165766 GAGCCCCACGATGGGC 165781 ||||||||| ||||| Sbjct 5983 CAGCCCCACGTTGGGC 5998 >seq4225 Length=7529 Score = 84.2 bits (92), Expect = 5e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 165706 GCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTC 165765 ||||||||| ||||||||||||||||||| ||| ||||||| |||||||||||| Sbjct 1001 GCTTGCCCGGCTAGCTCAGTCGGTAGAGCATGGGACACTTAATCTCAGGGTCGTGGGTTC 1060 Query 165766 GAGCCCCACGATGGGC 165781 ||||||||| ||||| Sbjct 1061 CAGCCCCACGTTGGGC 1076 >seq1048 Length=164628 Score = 84.2 bits (92), Expect = 5e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||| ||||||||||||||||||| ||||| ||||||| ||| ||||||||||| Sbjct 53159 TGCCCAGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTTGTGGGTTCGAG 53100 Query 165769 CCCCACGATGGGCA 165782 ||||||| |||||| Sbjct 53099 CCCCACGTTGGGCA 53086 >seq598 Length=532752 Score = 84.2 bits (92), Expect = 5e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 165703 AACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGG 165762 || ||||||||| ||||||||||||||||||| ||| ||||||| ||||||||| Sbjct 458808 AAAGCTTGCCCGGCTAGCTCAGTCGGTAGAGCATGGGACACTTAATCTCAGGGTCGTGGG 458867 Query 165763 TTCGAGCCCCACGATGGGC 165781 ||| ||||||||| ||||| Sbjct 458868 TTCCAGCCCCACGTTGGGC 458886 >seq583 Length=556070 Score = 84.2 bits (92), Expect = 5e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 ||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||| Sbjct 358929 CTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGCCCCACG 358988 Query 165776 ATGGGC 165781 ||||| Sbjct 358989 TTGGGC 358994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057359092302260