Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq215 105 5e-18 seq470 100 2e-16 >seq215 Length=1253150 Score = 105 bits (116), Expect = 5e-18 Identities = 87/106 (82%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 4294 AGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATT 4353 || ||| ||||||| || | ||||||||| |||| | ||| || |||||||||||||| Sbjct 111412 AGCTCCCTGCTGAGCACTATATTAATTCTATCTTTCAGAGGACGATTCTTCTCAGGAATG 111471 Query 4354 GAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCTG 4399 |||||||| || ||||||||||| |||||| ||||| |||| ||| Sbjct 111472 GAGAACCAGGTTTTTTTACCCATTATCACTGCATTCTCTTTACCTG 111517 >seq470 Length=704619 Score = 100 bits (110), Expect = 2e-16 Identities = 125/169 (74%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 101753 GTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCT 101812 |||||||| ||||||||| | || | || |||||||| ||||| || || ||||||||| Sbjct 26759 GTGACATGGGCAATCATGTATGTGAGCAGCGAATAGCTGGCAATATTGAAAGGCACTCCT 26818 Query 101813 AACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGA-CATA 101871 | |||||||| | || || || |||||||| || || || | |||| |||| |||| Sbjct 26819 AGTCCCATATCTCCAGACCTCTGGTACAGTTGGCAAGACAGTTCACCATT-CAGAACATA 26877 Query 101872 AAATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCT 101920 || || | | |||| ||||||||||| |||| || ||| ||| Sbjct 26878 GAACTGGCAGAGAGCATGGCAAGGCGGCAAAGCCATCAGAGAAATATCT 26926 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| ||||||||||| || || |||||||| || ||||| || || || | || || | Sbjct 29795 CTTTGTATTCTGCTCCAAAGTGTCTCCACTGGAAACCATAAACTGGCCCCAAGTCCCCCT 29854 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | |||||| || || || ||||||| | || | || ||||| |||||||||| Sbjct 29855 CTTCTCTGGTGTAGAACCCCTGTTTATCCAGGAACTCACGTGACCCATTGGCATCCCAAA 29914 Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTTG 102181 | | ||||| ||| || ||||||||| Sbjct 29915 TCTTTACGCCCTTTGCAGAGAGCTCTTTG 29943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361100176903802