Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq518 111 2e-19 seq1256 100 3e-16 seq184 96.9 4e-15 >seq518 Length=643042 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| ||||| | ||| ||||| || || | ||| ||||| ||||| | ||| | Sbjct 337086 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 337145 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||||||||| | |||||||| || |||||||| || ||||| ||||| ||||||| Sbjct 337146 TCAGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 337205 Query 24277 C 24277 | Sbjct 337206 C 337206 >seq1256 Length=67100 Score = 100 bits (110), Expect = 3e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| || || || ||||| || || |||||| ||| | || ||||| || ||||| | Sbjct 24994 TCCACCCATAGAAGTGCATGCTGGTGAGTTTGCCATAGTTGGGCTCTGCGATGTGGATGT 25053 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 | | |||||| || ||||||||||| ||||| |||||||| ||||| || | ||| || | Sbjct 25054 TGAGAGATTGGCTCTGATCGATGAACGCTCCTCTGTCTGCTGCCATCTTGAGGATAGTTT 25113 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATA 53022 | || | || ||||| | || ||||| Sbjct 25114 TCTGGGAGATCTCCCACACCGTCTTATA 25141 Score = 91.5 bits (100), Expect = 2e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 53390 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 53449 || || || || |||||||||| |||||| || ||||| || || || || ||||||||| Sbjct 28251 TACGTTTCATACGGTCCTTCCTGCTCAGCAAGCTCACAGCTAGCTTCCAAAGCACCGTAA 28310 Query 53450 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 53509 || ||||| || || |||| || || || || || || |||| || || ||||| Sbjct 28311 TAGATGGTCTCAAATATCTGCTGGTTCAGGAGCTGGGCCTCGGGGCTTTCGAAGGGATAC 28370 Query 53510 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGG 53559 | | ||| || || ||||| || | || || || || || ||||| || Sbjct 28371 CTCATGAGGATGAAGGCGTCAGCCAGGCCCTGCACGCCGATGCCGATGGG 28420 Score = 91.5 bits (100), Expect = 2e-13 Identities = 111/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 54029 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 54088 |||| ||||||||||||||||||||||| ||||| | || || ||||||| | || Sbjct 31004 ACTCTCTTCATAAAGAGATCAGGAATCCAGAGAGCAAAGAAAAGGTCTCTGGCACGCTGC 31063 Query 54089 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 54147 ||||| || || || ||||| |||||| || || ||| | | || || |||||||| Sbjct 31064 TCCTCCTTCCCAGTGTTCTTCTTTAAG-TCCAGAAACTCGAAGATGTCCAGGTGCCACGG 31122 Query 54148 TTCCAAGTATATGGTCATAACTCCAGGCC 54176 |||| ||| |||| | | | ||||||| Sbjct 31123 CTCCAGGTAGATGGCAAAAGCCCCAGGCC 31151 >seq184 Length=1437213 Score = 96.9 bits (106), Expect = 4e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| |||||||| || | ||| || || || |||||||| ||||||| || | || | Sbjct 74009 CCTCATCTCTACTGATGAGTTCATTAGAGAAAGTGAGTCCAGGCATTAAACCTCTTTTCT 73950 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| || || || ||||| || ||||||||||| || ||||| ||||| ||||| | Sbjct 73949 TCAGCCAGAAAATTGATGCAAAAGAGCCAGAAAAGAAGATGCCTTCCACTGCTGCAAATG 73890 Query 24277 C 24277 | Sbjct 73889 C 73889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593467027020960