Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq1157 187 3e-42 seq548 122 1e-22 >seq1157 Length=106949 Score = 187 bits (206), Expect = 3e-42 Identities = 227/307 (74%), Gaps = 2/307 (1%) Strand=Plus/Minus Query 83089 GGTCTGGCAGCGGTGGCTGTACCTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTT 83148 ||||| | || | ||||||| | ||| | |||| |||||| | |||||| | |||||| Sbjct 27571 GGTCTCGAAGTGCCGGCTGTAGCGGCGGAAGGGCACGCCGTCGGGACCCACGAGGAACTT 27512 Query 83149 CTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTC 83208 |||||||||||||| | ||||||||||||||| || |||||| ||| ||| |||| Sbjct 27511 CTCGAAGTTCCAGGAGATGTCGTTGCGGCACACCGGCGACCAGATGATGTACTGCGGGTT 27452 Query 83209 GCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAA 83268 | ||| |||| | ||||||| || ||||| ||||||| |||| | |||| Sbjct 27451 GGTCATCAGCGCAGACGGGTCGTCGTGCGGGAAGGGCAGCGCCTCTCTCAGGAGGACGAA 27392 Query 83269 GAGCGGATGTGC-CCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCT 83327 ||||| || || |||| | ||||| |||||||| |||||||| | | ||||| |||| Sbjct 27391 CAGCGGGTGCGCACCTTTC-CCGTTCACCTCGCATTTCTCGAACACGGTGAAGTTGGGCT 27333 Query 83328 CGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGT 83387 |||||||| || || || ||||||| ||| || ||| |||||| | || ||||| Sbjct 27332 TGAAGCCGTGGCCGGGCCGCACGTGCTCCAGCGAGAGCAGGATCTCCTCGTTGGTGGCGT 27273 Query 83388 TTTCCTG 83394 | ||||| Sbjct 27272 TCTCCTG 27266 >seq548 Length=592700 Score = 122 bits (134), Expect = 1e-22 Identities = 123/158 (78%), Gaps = 3/158 (2%) Strand=Plus/Minus Query 83386 GTTTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCC 83445 |||| |||||| ||||||||||| || ||||| || ||||| ||||||| ||| | Sbjct 476631 GTTTACCTGGTAGCCGAACTGGTTGCAGGGGAAGCCCAGCACCACCAGCCGCCGCGGG-- 476574 Query 83446 TAGGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGA 83505 ||| || |||||||| ||| | ||| ||||| ||||| |||||| | |||||||| || Sbjct 476573 TAG-CGTGCCTGCAGCTGGTTGAGCTGGGTGTAATCCCGCACCGTGGTCCCTCAGAGCGA 476515 Query 83506 CGCTACGTTCTCGATGAGCAAGACCCGGCCCCGTAAGA 83543 ||| |||||||||||||| | || || || || |||| Sbjct 476514 CGCCACGTTCTCGATGAGGACCACGCGCCCGCGGAAGA 476477 Score = 93.3 bits (102), Expect = 5e-14 Identities = 185/266 (70%), Gaps = 10/266 (4%) Strand=Plus/Minus Query 83135 CCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCA 83194 ||||||| ||||||||| |||||||||| | |||| ||| | ||| || ||| | Sbjct 476956 CCCACCAGGAACTTCTCAAAGTTCCAGGAGATGTCGGAGCGCCGCACGGGGCTCCACACC 476897 Query 83195 ATGAGCTGGGGGTCGCTCACGAGCGTGCTCATG-TCGTCGCTAGGCGCCGGCAGG--GCC 83251 | || |||| ||| ||| || ||| || ||||| || || |||||| | | Sbjct 476896 AGGAAACGGGGTTCGGTCATCAG-GTGATCCGCCTCGTCCACGGGGGCGGGCAGGTGGGC 476838 Query 83252 TCTCGTAGGAAGGCGAAGAGCGGATG--TGCCCTTGCACCGTTGACCTCGCACTTCTCGA 83309 | || ||| |||| |||| || || || ||| || ||||| |||| |||||||| || Sbjct 476837 TTTC--AGGTAGGCAAAGACGGGGTGGGTGTCCT-GC-CCGTTCACCTGGCACTTCTGGA 476782 Query 83310 AGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGA 83369 | || | ||||| ||||||||||| ||| || || |||||||| ||| | | || Sbjct 476781 ACAGGGTGAAGTTGGGCTCGAAGCCACCCCCCGGCCGCACGTGCTTGAGGCAGTTGAGGA 476722 Query 83370 TCTCGGCATTCTGGGCGTTTTCCTGG 83395 |||| | || | |||| |||||| Sbjct 476721 TCTCCTCGTTGGTGCCGTTCTCCTGG 476696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608535763152080