Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq80 111 3e-19 >seq80 Length=2138722 Score = 111 bits (122), Expect = 3e-19 Identities = 106/133 (80%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 || ||||||||||| ||| | ||| | ||||| |||||||||||||||| ||||| || Sbjct 549175 GCTTTTTTTGGAGCCCAGATGAATGCATTTATTCATGTTATTATGTACATGTATTACGGA 549116 Query 52117 ATGGCCGCTTGTGGTCCTAT-GTTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTAT 52175 | || || ||||| |||| ||||||||| || || ||||||||||| || | ||||| Sbjct 549115 TTAGCTGCCTGTGGCCCTAAAGTTCAGAAA-TACCTGTGGTGGAAACGATACTTGACTAT 549057 Query 52176 AATGCAGTTGGTA 52188 | |||| |||||| Sbjct 549056 ATTGCAATTGGTA 549044 Score = 100 bits (110), Expect = 5e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 52185 GGTACAGTTCCATATAGCTATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTT 52244 ||| ||||||||| | |||| || || || || |||| ||||| || ||||| || || Sbjct 548319 GGTGCAGTTCCATGTGACTATTGGCCACACAGCCTTGTCTATTTATATTGATTGTCCTTT 548260 Query 52245 TCCAAAATGGATACAGTGGTCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGG 52304 || |||||||| || ||| || ||| ||||| |||| | ||||| || ||||||| Sbjct 548259 CCCTAAATGGATGCACTGGGGTGTAATTTTCTATGCTATCACCTTCATTTTCTTGTTTGG 548200 Query 52305 TAACTTCTATTTTAGAACATACAAG 52329 ||||||||| | | | ||||| ||| Sbjct 548199 TAACTTCTACTATCGGACATATAAG 548175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922800956292080