Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_002229.3 Length=177874 Score E Sequences producing significant alignments: (Bits) Value seq925 668 0.0 seq295 98.7 1e-15 >seq925 Length=238851 Score = 668 bits (740), Expect = 0.0 Identities = 561/698 (80%), Gaps = 64/698 (9%) Strand=Plus/Minus Query 139497 GGCCGCGCGTGTGGGAGCGACGCCGTCCGCGCGCCCCACGGCGCAggggggcgcgggggt 139556 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 52370 GGCCGCGCGTGTGGGAGCGACGCCGTCCGCGCGCCCCACGGCGCAGGGGG-CGCGGGGGT 52312 Query 139557 tgccccgggggcgccgctcccgtgttgctctgctgggggcgcggggccgcgcgcCGCATC 139616 ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| | Sbjct 52311 TGCCCCGGGGGCGCCGCTCCCGTGTTGCTGTGCTGGGGGCGCGGGGCCGCGC--CGCAGC 52254 Query 139617 TCCCGGGCGCCGCCGAGGCTGACAGAGGCGAACTCTTCGCGGCGGCAATGGCGGGTGCCG 139676 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 52253 TCCCGGGCGCCGCCGAGGCTGACAGAGGCGAACTCTTCGCGGCGGCAATGGCGGGTGCCG 52194 Query 139677 GCCGACCGCGGCC-TGCGGGCGAGGACCCCAGGGCGGATGGGGGCGAGAGGACCCCTCGC 139735 ||||||||||||| |||| ||| |||||||||||||| | |||||||| ||||||| ||| Sbjct 52193 GCCGACCGCGGCCGTGCGAGCGGGGACCCCAGGGCGGTTCGGGGCGAGCGGACCCCACGC 52134 Query 139736 TGACGttt----------------ttttttGTTTGCCGTGGAGCCCCTTTCGGTCCTTTC 139779 |||||||| |||||| |||| | ||||| || ||| |||||| Sbjct 52133 TGACGTTTTTTTGTTTTGTTGTTGTTTTTTTTTTGTGGAAGAGCCGCTCCCGGCCCTTTC 52074 Query 139780 T-----------CCCGCGTCCGCCCCANNNNNNNNNNNNNNNNNNNNCC----------- 139817 | ||| |||| ||||| || Sbjct 52073 TCTCTCTCCCTCCCCCGGTCCCCCCCACACCGCCTCAGCGCCCCGGCCCCCTCCCGCCGC 52014 Query 139818 ---------CCTGGGGCGGCTCCCCTAGCCCGCTGAAAGTCAGCGAGT-AAACA------ 139861 ||||||||||||||||| ||||||||||||||||||||| ||||| Sbjct 52013 CCGCCTCCCCCTGGGGCGGCTCCCCTCGCCCGCTGAAAGTCAGCGAGTAAAACAGCGGGC 51954 Query 139862 --GCGGGCGGAGGGAGCGCGGCGACAGTACCATCAATACCTCCGATTAGGGTTAGACACA 139919 ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| Sbjct 51953 GGGCGGGCGGAGGGAGCGCGGCGACAGCACCATCAATACCCCCGATTAGGGTTAGACACA 51894 Query 139920 GCGGAGCCTTCCACCCGCCACGTGTGCCGGGGGAACCCCGCGT--GGGGCTCTTGTAGCT 139977 |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 51893 GCGGAGCCTTCCACCCGCCACGCGTGCCGGGGGAACCCCGCGTGGGGGGCTCTTGTAGCC 51834 Query 139978 TCCTCCGCCTACGCCCACCGCGCGCCTATTGGCCGGGCTGTACGCTGCCGCGTAGCTATT 140037 ||||||| | |||||||||| || ||||||||||| || | |||||||||| || ||| Sbjct 51833 TCCTCCGGCCACGCCCACCGAGCTCCTATTGGCCGAGCCGCACGCTGCCGCCCCGCCATT 51774 Query 140038 GGCGGCGGGGAGGAGAGCGAGCAGAGAGGGGCCGGT-GCGGGAGTTTGGAACTCCGCGGT 140096 ||| | | | |||||||| || |||||||| |||| ||||||||||||| | ||||||| Sbjct 51773 GGCCGAGAGCGGGAGAGCGGGCGGAGAGGGGACGGTGGCGGGAGTTTGGATCCCCGCGGT 51714 Query 140097 CATTCATCTCCCGCCACGCCCCATGCACGTGCCCCGCC 140134 | |||||||||||||||| | ||| || |||| ||| Sbjct 51713 CGCTCATCTCCCGCCACGCGGCGTGC-CGGGCCCGGCC 51677 Score = 659 bits (730), Expect = 0.0 Identities = 559/698 (80%), Gaps = 64/698 (9%) Strand=Plus/Plus Query 1486 GGCGGGGCACGTGCATGGGGCGTGGCGGGAGATGAATGACCGCGGAGTTCCAAACTCCCG 1545 ||| |||| || ||| | |||||||||||||||| |||||||| | |||||||||||| Sbjct 51677 GGCCGGGCCCG-GCACGCCGCGTGGCGGGAGATGAGCGACCGCGGGGATCCAAACTCCCG 51735 Query 1546 C-ACCGGCCCCTCTCTGCTCGCTCTCCTCCCCGCCGCCAATAGCTACGCGGCAGCGTACA 1604 | |||| |||||||| || |||||||| | | | |||||| || |||||||||| | Sbjct 51736 CCACCGTCCCCTCTCCGCCCGCTCTCCCGCTCTCGGCCAATGGCGGGGCGGCAGCGTGCG 51795 Query 1605 GCCCGGCCAATAGGCGCGCGGTGGGCGTAGGCGGAGGAAGCTACAAGAGCCCC--ACGCG 1662 || ||||||||||| || |||||||||| | ||||||| |||||||||||||| ||||| Sbjct 51796 GCTCGGCCAATAGGAGCTCGGTGGGCGTGGCCGGAGGAGGCTACAAGAGCCCCCCACGCG 51855 Query 1663 GGGTTCCCCCGGCACACGTGGCGGGTGGAAGGCTCCGCTGTGTCTAACCCTAATCGGAGG 1722 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct 51856 GGGTTCCCCCGGCACGCGTGGCGGGTGGAAGGCTCCGCTGTGTCTAACCCTAATCGGGGG 51915 Query 1723 TATTGATGGTACTGTCGCCGCGCTCCCT--------CCGCCCGCTG-TTTACTCGCTGAC 1773 |||||||||| ||||||||||||||||| |||||||||| ||||||||||||| Sbjct 51916 TATTGATGGTGCTGTCGCCGCGCTCCCTCCGCCCGCCCGCCCGCTGTTTTACTCGCTGAC 51975 Query 1774 TTTCAGCGGGCTAGGGGAGCCGCCCCAGGGGG----CGCCNNNNNNNNNNNNNNNNNNNN 1829 ||||||||||| |||||||||||||||||||| | | Sbjct 51976 TTTCAGCGGGCGAGGGGAGCCGCCCCAGGGGGAGGCGGGCGGCGGGAGGGGGCCGGGGCG 52035 Query 1830 CGGACGCGG---------------------------GAGAAAGGACCGAAAGGGGCTCCA 1862 | || |||| |||||||| ||| || ||||| Sbjct 52036 CTGAGGCGGTGTGGGGGGGACCGGGGGAGGGAGAGAGAGAAAGGGCCGGGAGCGGCTCTT 52095 Query 1863 CGGCAAACaaaaaaaaaC----------------GTCAGCGAGGGGTCCTCTCGCCCCCA 1906 | |||| |||||| ||| ||||||| ||||||| |||||||| | Sbjct 52096 CCACAAAAAAAAAACAACAACAAAACAAAAAAACGTCAGCGTGGGGTCCGCTCGCCCCGA 52155 Query 1907 TCCGCCCTGGGGTCCTCGCCCGCA-GGCCGCGGTCGGCCGGCACCCGCCATTGCCGCCGC 1965 |||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||| Sbjct 52156 ACCGCCCTGGGGTCCCCGCTCGCACGGCCGCGGTCGGCCGGCACCCGCCATTGCCGCCGC 52215 Query 1966 GAAGAGTTCGCCTCTGTCAGCCTCGGCGGCGCCCGGGAGATGCGgcgcgcggccccgcgc 2025 ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct 52216 GAAGAGTTCGCCTCTGTCAGCCTCGGCGGCGCCCGGGAGCTGCG--GCGCGGCCCCGCGC 52273 Query 2026 ccccagcagagcaacacgggagcggcgcccccggggcaacccccgcgccccccTGCGCCG 2085 |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 52274 CCCCAGCACAGCAACACGGGAGCGGCGCCCCCGGGGCAACCCCCGCG-CCCCCTGCGCCG 52332 Query 2086 TGGGGCGCGCGGACGGCGTCGCTCCCACACGCGCGGCC 2123 |||||||||||||||||||||||||||||||||||||| Sbjct 52333 TGGGGCGCGCGGACGGCGTCGCTCCCACACGCGCGGCC 52370 Score = 113 bits (124), Expect = 5e-20 Identities = 169/237 (71%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 2449 GCTGAGCGCAGTGCGATGCCCCCGGGTCATCACCCGTCCCGCAGATCCCCGTGCACGGGG 2508 ||||||||| ||| | | ||||| |||| | |||| ||||| | ||| ||||| || || Sbjct 52658 GCTGAGCGCCGTGAGGCGGCCCCGCGTCACCGCCCGCCCCGCGGCTCCACGTGCGCGTGG 52717 Query 2509 TCAGTGCCATCTTGTGGTCTCGGCTTTC---TTT--TTTCCCCCTTTTGCACGAAGAGTC 2563 | | |||||||||||| |||||| ||| ||| | |||| ||| |||||| | || Sbjct 52718 CCGGGGCCATCTTGTGGCCTCGGCGTTCCCATTTCCCTCCCCCATTTCGCACGAGGGATC 52777 Query 2564 AGTGAACTTGGGGTACTTAATCGTGCTTTAATTGCGCGATGGAGAACCGTTGCTAGAATA 2623 | ||| | ||| || | || ||| ||| | || ||| | || |||| |||| Sbjct 52778 AATGAGC-GCGGGCGCTCCGTTATGGTTTCGTTGTGGGACGGAAACCCATTGCCAGAAGG 52836 Query 2624 TGTGGGGATAGAGAAGTCCGATACCCTCAGAAATGTGCGAGTCCTGCGGGTAGAATC 2680 |||||| || ||||||||| | | | | || ||||||| ||||||| || ||| || Sbjct 52837 TGTGGGCATGGAGAAGTCCAACGCGCCCGGAGATGTGCGGGTCCTGCAGGCAGAGTC 52893 Score = 113 bits (124), Expect = 5e-20 Identities = 169/237 (71%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 138940 GATTCTACCCGCAGGACTCGCACATTTCTGAGGGTATCGGACTTCTCTATCCCCACATAT 138999 || ||| || ||||||| ||||||| || | | | | ||||||||| || |||||| | Sbjct 52893 GACTCTGCCTGCAGGACCCGCACATCTCCGGGCGCGTTGGACTTCTCCATGCCCACACCT 52834 Query 139000 TCTAGCAACGGTTCTCCATCGCGCAATTAAAGCACGATTAAGTACCCCAAGTTCACTGAC 139059 ||| |||| || | ||| || | ||| ||| || | || ||| | ||| ||| Sbjct 52833 TCTGGCAATGGGTTTCCGTCCCACAACGAAACCATAACGGAGCGCCCGC-GCTCATTGAT 52775 Query 139060 TCTTCGTGCAAAAGGGGGAAA--AAA---GAAAGCCGAGACCACAAGATGGCACTGACCC 139114 | |||||| ||| |||| | ||| ||| |||||| |||||||||||| | | || Sbjct 52774 CCCTCGTGCGAAATGGGGGAGGGAAATGGGAACGCCGAGGCCACAAGATGGCCCCGGCCA 52715 Query 139115 CGTGCACGGGGATCTGCGGGACGGGTGATGACCCGGGGGCATCGCACTGCGCTCAGC 139171 || ||||| ||| | ||||| |||| | |||| ||||| | | ||| ||||||||| Sbjct 52714 CGCGCACGTGGAGCCGCGGGGCGGGCGGTGACGCGGGGCCGCCTCACGGCGCTCAGC 52658 >seq295 Length=1006807 Score = 98.7 bits (108), Expect = 1e-15 Identities = 210/314 (67%), Gaps = 0/314 (0%) Strand=Plus/Plus Query 153644 CTGCCCTTTGAAAAGTGTCCCGATTTTTGTCTGAGAATTGGGGGTTTGGAGGCCAGCTTT 153703 |||| ||| | |||| ||| | || || ||| | | ||||| ||||||| | ||| Sbjct 375492 CTGCGCTTCGTAAAGCAGCCCCAGTTCTGCCTGCGGGTCGGGGGCTTGGAGGGCTCCTTC 375551 Query 153704 CATAAAGGGCAGGAGGAGCTGTTAGAGTATTGTGAAGCACTTTATTTACCACAACCTGTT 153763 || | ||||||||||||||| |||| || || | || || | || || || Sbjct 375552 CACGACGGGCAGGAGGAGCTGCGGGAGTGCTGCGAGGTGCTCTACCTGCCGCAGCCCACC 375611 Query 153764 AAGATGGAAATAGTAGGCATTGTAGACGATGTGCCATGTCTGGCAACGGGGATGCAATTA 153823 | |||||| | || |||| || || || ||||| || ||||| |||||| ||| | Sbjct 375612 AGGATGGAGGTGGTGGGCACGGTGGATGACGTGCCCTGCCTGGCCACGGGGCAGCAGCTG 375671 Query 153824 CTCATTCTTGTTGCCGAGGGGGGAGAGGTATATGCCTATGAAGAAGATACTCTGCATAAG 153883 |||| || || || ||| | || ||||| || ||||| || || || || ||||| ||| Sbjct 375672 GTCATCCTCGTCGCTGAGAGCGGGGAGGTGTACGCCTACGAGGAGGAGACGCTGCACAAG 375731 Query 153884 TTAGCCACGAGTTTTTCCGAATTCCTTGAAATTGGAGTGAAATCTTTAGGGAGGGAGGTT 153943 | ||| ||| | ||| ||| | ||||| || || | |||| || || Sbjct 375732 GTTGCCGAGAGCATGCTCGAGTTCAGAAATATTGGGCTGCAACGCCTGGGGAAAGAAGTC 375791 Query 153944 TACCATTGTGGAGA 153957 ||||| || ||||| Sbjct 375792 TACCACTGCGGAGA 375805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568824797525280