Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_002641.1 Length=159160 Score E Sequences producing significant alignments: (Bits) Value seq225 286 4e-72 >seq225 Length=1211569 Score = 286 bits (316), Expect = 4e-72 Identities = 314/422 (74%), Gaps = 0/422 (0%) Strand=Plus/Minus Query 125092 GCCCGTGCCGTGCTTACCCATCCGCCGTGCTCCCGCAACCACTCGCCCTGCTCTTCGGCC 125151 ||||| || ||| |||||||||||||||||| || |||||||||| |||| |||||| Sbjct 1162927 GCCCGGCCCCCGCTCACCCATCCGCCGTGCTCCTCCAGCCACTCGCCCCGCTCCTCGGCC 1162868 Query 125152 AGGTACGCGGCCAGCGCTGCGGCCAAGCGGCTTGGCCCTTCCTCACAGCCGTTTTCGTAC 125211 ||||||||||||||||| ||||||| |||||| ||||||||||| | |||| | ||| | Sbjct 1162867 AGGTACGCGGCCAGCGCGGCGGCCAGGCGGCTCGGCCCTTCCTCGCGGCCGCTCTCGGCC 1162808 Query 125212 AGCGCCGTTGCCAGCGAGCCGCCGAGGACTATGGTCGCCAGGCATCGACCCCAGTTGAAG 125271 ||||||| ||||||| |||| ||| || | | |||||| || |||||||||| | Sbjct 1162807 AGCGCCGCCGCCAGCGTGCCGGCGAACACCACGAGCGCCAGCAGCCGGCCCCAGTTGAGG 1162748 Query 125272 CCGCTTCCGGAGTTCAATTCAGACACCACACTTTGCAGCGCCGACAACGCTGCCTGCGTG 125331 |||| ||| | || | | | |||| || ||||| || | ||| || ||| Sbjct 1162747 CCGCCGTCGGCCTCCAGCTGCGCCGCCACCCTCCGCAGCAGCGCCGCCGCCTCCCGCGGC 1162688 Query 125332 CCGCCGCTCGCTAACGGCGCGCAGGAGCGAAAGAAGGGCCTCTCTCGCCGCTCCAGCTCG 125391 | | | ||| | ||||||||||||||| ||||| |||| |||||| |||||||||||| Sbjct 1162687 TCTGCCCGCGCCAGCGGCGCGCAGGAGCGGAAGAACGGCCGCTCTCGGCGCTCCAGCTCG 1162628 Query 125392 GCCGCCGCTCGCCGNNNNNNNNNNNNNGTAGGACTCGGCGGCGGCCCTTCCTTGCCGCAG 125451 |||||||| ||||| || | || |||||| || | |||| | Sbjct 1162627 GCCGCCGCCCGCCGCAGCTCGGCCGCCGTGGCGCTGGGCGGCAGCGCGGAGCCGCCGGCG 1162568 Query 125452 CAGTGCTGGAAGTAATCCTCCAGCAGCAACGCCGTTTCTTCCTTCAGGGAGTCAGCCATG 125511 | |||||||||||| ||||||||||||| |||||| || |||||||| ||| | | |||| Sbjct 1162567 CGGTGCTGGAAGTAGTCCTCCAGCAGCAGCGCCGTCTCCTCCTTCAGAGAGCCCGGCATG 1162508 Query 125512 GC 125513 || Sbjct 1162507 GC 1162506 Score = 282 bits (312), Expect = 4e-71 Identities = 313/422 (74%), Gaps = 0/422 (0%) Strand=Plus/Plus Query 157083 GCCATGGCTGACTCCCTGAAGGAAGAAACGGCGTTGCTGCTGGAGGATTACTTCCAGCAC 157142 |||||| | | ||| |||||||| || |||||| ||||||||||||| |||||||||||| Sbjct 1162506 GCCATGCCGGGCTCTCTGAAGGAGGAGACGGCGCTGCTGCTGGAGGACTACTTCCAGCAC 1162565 Query 157143 TGCTGCGGCAAGGAAGGGCCGCCGCCGAGTCCTACGGCGGCAGAGCTGCGGCGAGCNNNN 157202 || |||| | || |||||| || | |||||||| ||||||||||| || Sbjct 1162566 CGCGCCGGCGGCTCCGCGCTGCCGCCCAGCGCCACGGCGGCCGAGCTGCGGCGGGCGGCG 1162625 Query 157203 NNNNNNNNNGAGCGGCGAGAGAGGCCCTTCTTTCGCTCCTGCGCGCCGTTAGCGAGCGGC 157262 ||||| |||||| |||| ||||| ||||||||||||||| | ||| | | Sbjct 1162626 GCCGAGCTGGAGCGCCGAGAGCGGCCGTTCTTCCGCTCCTGCGCGCCGCTGGCGCGGGCA 1162685 Query 157263 GGCACGCAGGCAGCGTTGTCGGCGCTGCAAAGTGTGGTGTCTGAATTGAACTCCGGAAGC 157322 | ||| || ||| | || ||||| || |||| | | | || | ||| || Sbjct 1162686 GAGCCGCGGGAGGCGGCGGCGCTGCTGCGGAGGGTGGCGGCGCAGCTGGAGGCCGACGGC 1162745 Query 157323 GGCTTCAACTGGGGTCGATGCCTGGCGACCATAGTCCTCGGCGGCTCGCTGGCAACGGCG 157382 ||| |||||||||| || |||||| | | || ||| |||| ||||||| ||||| Sbjct 1162746 GGCCTCAACTGGGGCCGGCTGCTGGCGCTCGTGGTGTTCGCCGGCACGCTGGCGGCGGCG 1162805 Query 157383 CTGTACGAAAACGGCTGTGAGGAAGGGCCAAGCCGCTTGGCCGCAGCGCTGGCCGCGTAC 157442 ||| ||| | |||| | ||||||||||| |||||| ||||||| ||||||||||||||| Sbjct 1162806 CTGGCCGAGAGCGGCCGCGAGGAAGGGCCGAGCCGCCTGGCCGCCGCGCTGGCCGCGTAC 1162865 Query 157443 CTGGCCGAAGAGCAGGGCGAGTGGTTGCGGGAGCACGGCGGATGGGTAAGCACGGCACGG 157502 |||||||| |||| |||||||||| || |||||||||||||||||| ||| || ||| Sbjct 1162866 CTGGCCGAGGAGCGGGGCGAGTGGCTGGAGGAGCACGGCGGATGGGTGAGCGGGGGCCGG 1162925 Query 157503 GC 157504 || Sbjct 1162926 GC 1162927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 508965674630400