Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq476 369 3e-97 seq583 87.8 1e-12 >seq476 Length=696916 Score = 369 bits (408), Expect = 3e-97 Identities = 743/1094 (68%), Gaps = 6/1094 (1%) Strand=Plus/Minus Query 107523 ATCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGAC 107582 |||||||| || ||| | || |||||| |||| || ||| | || || || | | Sbjct 620554 ATCAACTGCTCCGGGGTGGTCCGCGGGGACGAGGAGGCGGTGCGGGACGCGCTGCTGGTC 620495 Query 107583 AACCTGGAAGTGAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACC 107642 |||||||| |||||||| ||| || |||||| || | | ||||| ||||| || Sbjct 620494 AACCTGGAGGTGAAGAACAAGAGGAAGCCTCTGACCCCCGAGGAGTACCTGAACATGACG 620435 Query 107643 AGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAA 107702 | ||||| | |||| | || || | | | ||||||| ||||| | || Sbjct 620434 AAGGACTGCGGCAGCTTTAGGGAGAGCCGGCGCTACGTCGAGTTCCCGCTGAGCGAGGAG 620375 Query 107703 GAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAA 107762 ||| | ||||||||| |||||||| |||||| |||| | ||||| || | || || Sbjct 620374 GAGGCCGGCTTCCCCATCGCCTACTCCATGGTGATCCACCACAAGATCGAGATGTTCGAG 620315 Query 107763 CGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAG 107822 ||||| ||||| |||| || ||||| |||||| | ||||| ||||||||||| | ||| Sbjct 620314 CGGCTCCTGCGCTCCGTCTACGCCCCGCAGAACGTCTACTGCGTCCACGTGGACGCCAAG 620255 Query 107823 TCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTC 107882 | || | | ||| | |||| || |||||| ||||||||||||| |||||| Sbjct 620254 GCTCCCGCCGCCTTCCAGCAGGCCGTGCGGGCCATCGCCGCCTGCTTCCCCAACGTCTTC 620195 Query 107883 ATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTG 107942 ||||||| ||| ||||| || ||||| |||||| | |||| || ||||| Sbjct 620194 GTGGCCAGCCGCCTGGAGAGCGTGGTGTACGCCTCGTGGTCCCGGCTGCAGGCCGACCTC 620135 Query 107943 AACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGC 108002 ||||| ||| ||| |||| | ||| | ||||| ||| ||| | || || || ||| Sbjct 620134 AACTGCATGCGGGACCTGCTGCGCAGCCCCGTGCCCTGGCGCTACGTGCTCAACACGTGC 620075 Query 108003 GGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAG 108062 || || ||||||||||| |||||||| || |||||||||| || || || || || || Sbjct 620074 GGCACGGACTTCCCCATCAAGACCAACGCGGAGATGGTCCGCGCGCTGCAGGTGCTGCAG 620015 Query 108063 GGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATAC 108122 || ||||||| |||||||| ||| || | | || ||| | | |||||||| ||| Sbjct 620014 GGGCAGAACAGCATGGAGTCCGAGAGGCCGACGGCGTACAAGCAGGAGCGCTGGAAGTAC 619955 Query 108123 CGCTA-TGAGGTGA-CAGACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTG 108180 | | | ||| || ||| || | | | || || | |||| ||||| || Sbjct 619954 CACCACCGAGTGGAGCAG-TTCA-TCTCGCGCACGGCCACGGCGAAGCCGCCTCCTCCGC 619897 Query 108181 ATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAAC 108240 | ||||||||||| || | ||||| | | |||| | || ||||| || | | Sbjct 619896 TCCGCTCGCCCATGTTCACGGGCAGCGCCTACATCGCGGCCACGCGGGCCTTCGTGCGGC 619837 Query 108241 ATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCC 108300 | || | || |||| | | || | | | || |||| ||| |||||||| |||| Sbjct 619836 ACGTGCTGGAGGACCCCACGGCGCAGCGGTTCCTCGAGTGGGCCAAGGACACCTACAGCC 619777 Query 108301 CCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTA 108360 ||||||| ||| | |||||||| || | || || || | |||| ||| | || || Sbjct 619776 CCGACGAGCACGTGTGGGCCACGCTGAACCGCGCGCCCGGCGTGCCCGGCGCCGTGCCCC 619717 Query 108361 GCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGT 108420 | || ||||| || | || ||||||| || | || | || ||||||||||||| Sbjct 619716 ACAACGACAAGTTCCAGCTGTCCGACATGAACGCGCTGCCCCGCCTGGTCAAGTGGCAGT 619657 Query 108421 ACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGA 108480 ||| || || || ||| || ||||| || | |||||| | || | | | Sbjct 619656 ACCTGGACGGCGACACGAGCCGCGGAGCGCCCTACCCGCCCTGCACCGGCCGCTTCCAGC 619597 Query 108481 GGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCT 108540 | ||| ||||| | ||||||||||||||| || |||||| || | | | || ||||||| Sbjct 619596 GCGCCGTCTGCGTGTACGGGGCCGGGGACGTGGCCTGGATGCTGCGGCAGCACCACCTCT 619537 Query 108541 TGGCAAACAAGTTTGAC-CCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTAC 108599 |||| |||||||| ||| |||| ||||| || || | | |||||| | || || || Sbjct 619536 TGGCCAACAAGTTCGACGCCGA-AGTGGACGACGCCGCCGTCCAGTGCCTCGAGCAGCAC 619478 Query 108600 CTACGTCATAAGGC 108613 || || || || || Sbjct 619477 CTGCGGCACAAAGC 619464 >seq583 Length=556070 Score = 87.8 bits (96), Expect = 1e-12 Identities = 194/287 (68%), Gaps = 8/287 (3%) Strand=Plus/Plus Query 108274 TTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTG 108333 |||| |||| |||||||| || ||||| || || |||| ||||| || ||||| | Sbjct 331722 TTGAGTGGGCAAAAGACACTTACAGCCCTGATGAGTACCTGTGGGCAACAATTCAGAGAA 331781 Query 108334 -CTCCGTGGATGCCTGGCTCTGTTCCT---AGCCACCCCAAGTATCACATCTCAGACATG 108389 | ||| | | || || ||||| || || || |||||| || | || || ||| Sbjct 331782 TCCCCGATG-TCCCGGGTGCTGTTTCTTCTAGTGAC---AAGTATGACGTTTCTGATATG 331837 Query 108390 ACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCG 108449 | ||| | |||||| | ||||||||||||||| || ||||| || | || ||| Sbjct 331838 AATGCTCTGGCCAGGTTTGTCAAGTGGCAGTACTTTGAAGGAGACGTGTCTAAAGGTGCG 331897 Query 108450 CCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGAC 108509 || || |||| ||| |||| | ||| | | ||||| | | |||| || ||| Sbjct 331898 CCCTACCCACCGTGCAGTGGAGTTCATGTTCGCTCTGTCTGCGTGTTTGGGGTAGGAGAC 331957 Query 108510 CTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGA 108556 ||| |||||| | | ||||| ||| |||| || || ||||| || Sbjct 331958 CTGAGCTGGATGGTGCGAAACCACCACTTCTTTGCTAATAAGTTCGA 332004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348123204269148