Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq518 120 4e-22 seq184 102 1e-16 seq1256 100 4e-16 >seq518 Length=643042 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| ||||| | ||| || || || || | ||| ||||| ||||| | ||| | Sbjct 337086 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 337145 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||||||||| | ||| ||||| || ||||||||||| ||||| ||||||||||||| Sbjct 337146 TCAGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 337205 Query 33724 CAATAAGTCTCTCTCC 33739 | | | |||||| || Sbjct 337206 CGACCACTCTCTCACC 337221 >seq184 Length=1437213 Score = 102 bits (112), Expect = 1e-16 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 |||||||| || || || || | |||||| |||||||| || || |||||||| ||||| Sbjct 72417 ATCTTTAATGTATGTGTCAATGAGAAGACTGTACATTTCTGAGTGTATGTTTTCCATGGC 72358 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 33947 ||||| || || |||||||| | ||||| ||||||||||||||| Sbjct 72357 AATCTGGAAGCCATAGAAACAACGCGCCTCTGTAATCTGCACTTCT 72312 Score = 96.9 bits (106), Expect = 4e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| |||||||| || | ||| ||||| || |||||||| ||||||| || | || | Sbjct 74009 CCTCATCTCTACTGATGAGTTCATTAGAGAAAGTGAGTCCAGGCATTAAACCTCTTTTCT 73950 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || || || || || || || ||||||||||| ||||| ||||| ||||| | Sbjct 73949 TCAGCCAGAAAATTGATGCAAAAGAGCCAGAAAAGAAGATGCCTTCCACTGCTGCAAATG 73890 Query 33724 C 33724 | Sbjct 73889 C 73889 Score = 82.4 bits (90), Expect = 1e-10 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 33276 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33335 ||||| |||||||| | || |||||||| || || || || || ||||| || || ||| Sbjct 75263 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 75204 Query 33336 TCCAATGATATATTTTCCATGAAATCAAACGGATT 33370 |||| || || || |||||||||||||| ||||| Sbjct 75203 TCCAGAGAGATGTTCTCCATGAAATCAAAAGGATT 75169 >seq1256 Length=67100 Score = 100 bits (110), Expect = 4e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| || || || ||||| || || |||||| ||| | || ||||| || ||||| | Sbjct 24994 TCCACCCATAGAAGTGCATGCTGGTGAGTTTGCCATAGTTGGGCTCTGCGATGTGGATGT 25053 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 | | |||||| || ||||||||||| ||||| |||||||| ||||| || | ||| || | Sbjct 25054 TGAGAGATTGGCTCTGATCGATGAACGCTCCTCTGTCTGCTGCCATCTTGAGGATAGTTT 25113 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATA 62260 | || | || ||||| | || ||||| Sbjct 25114 TCTGGGAGATCTCCCACACCGTCTTATA 25141 Score = 100 bits (110), Expect = 4e-16 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 62628 TATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAA 62687 || || ||||| |||||||||| |||||| || | ||| || || || || ||||||||| Sbjct 28251 TACGTTTCATACGGTCCTTCCTGCTCAGCAAGCTCACAGCTAGCTTCCAAAGCACCGTAA 28310 Query 62688 TAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 62747 || ||||| ||||| |||| || || || || || || ||||| || || ||||| Sbjct 28311 TAGATGGTCTCAAATATCTGCTGGTTCAGGAGCTGGGCCTCGGGGCTTTCGAAGGGATAC 28370 Query 62748 TTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGG 62797 | | ||| || || ||||| || | || || || || || ||||| || Sbjct 28371 CTCATGAGGATGAAGGCGTCAGCCAGGCCCTGCACGCCGATGCCGATGGG 28420 Score = 91.5 bits (100), Expect = 2e-13 Identities = 111/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 63267 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGT 63326 |||| ||||||||||||||||||||||| ||||| | || || ||||| | | || Sbjct 31004 ACTCTCTTCATAAAGAGATCAGGAATCCAGAGAGCAAAGAAAAGGTCTCTGGCACGCTGC 31063 Query 63327 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63385 ||||| || || || ||||| |||||| || || ||| | | || || |||||||| Sbjct 31064 TCCTCCTTCCCAGTGTTCTTCTTTAAG-TCCAGAAACTCGAAGATGTCCAGGTGCCACGG 31122 Query 63386 TTCCAAGTATATGGCCATAACTCCAGGCC 63414 |||| ||| ||||| | | | ||||||| Sbjct 31123 CTCCAGGTAGATGGCAAAAGCCCCAGGCC 31151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629547549958560