Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_003387.1 Length=52797 Score E Sequences producing significant alignments: (Bits) Value SEQ11842 123 8e-24 >SEQ11842 Length=2329 Score = 123 bits (136), Expect = 8e-24 Identities = 208/299 (70%), Gaps = 3/299 (1%) Strand=Plus/Plus Query 12557 TTCCCGCAGATCAAGACGATTGGCGGCTGGCGGTCGCAGGACGCTTACCCCGATCACCCG 12616 ||||| || | || | || ||||| ||||| || ||||| ||||| |||||||| Sbjct 132 TTCCCCGAGGTGCAGTCCATCGGCGGATGGCGACCGGTCGACGCCTACCCTGATCACCCC 191 Query 12617 TCGGGCCGGGCGCTCGACATTATGATCCCCAACTACTCGTCGAAGGACGGTGTTGCGCTG 12676 |||||||| || | ||||| | ||||||| ||||||| || | || || | |||| Sbjct 192 TCGGGCCGCGCCGTGGACATCACGATCCCCGACTACTCCTCAAGCGAGGGCCGCGAGCTG 251 Query 12677 GGCGACAGCGTGATGCAGTTCCTTATGAAGAACGCCGACGCGCTCGGCGTCGAGTACACG 12736 ||| | || | | | | | ||| ||| | || ||| || | |||||||| | Sbjct 252 GGCAATCGCATCAAGAACTACCTGCTGACGCACCGCGAGTTCTTCAACATCGAGTACCTG 311 Query 12737 ATCTGGCGGCAGACCTACCGCAACACCTCGGGGCAGTCGAACCTCATGGAGGACCGCGGC 12796 |||||||||||| ||| | | || | |||||| | |||| ||||||||||| ||| Sbjct 312 ATCTGGCGGCAGCAGTACATCCCCGCCACCGGGCAGCCCAACCAGATGGAGGACCGGGGC 371 Query 12797 AGCGACACGCAGAACCACATGGATCACGTGCACGTGA-CGTCGAAG--GGCGGCAAGCC 12852 || ||||||||| | || ||||||||||| | ||||| | ||||| ||||| Sbjct 372 GATCCGACCCAGAACCACTTCGACCACGTGCACGTCACCGTCGCCGGCGGCGGAAAGCC 430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 168760029909716