Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq184 116 3e-21 seq518 111 1e-19 >seq184 Length=1437213 Score = 116 bits (128), Expect = 3e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || |||||||| || ||||||||||| || || | ||| ||||| || |||| ||| || Sbjct 74007 TCATCTCTACTGATGAGTTCATTAGAGAAAGTGAGTCCAGGCATTAAACCTCTTTTCTTC 73948 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| || || | ||||| || ||||||||||| || || ||||| |||||||||||| Sbjct 73947 AGCCAGAAAATTGATGCAAAAGAGCCAGAAAAGAAGATGCCTTCCACTGCTGCAAATGCT 73888 Query 11774 ACTACTCTTTCTCC 11787 || || | |||||| Sbjct 73887 ACCACACGTTCTCC 73874 >seq518 Length=643042 Score = 111 bits (122), Expect = 1e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || |||||||| || || || ||||| ||||||| || | || || Sbjct 337088 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCTTC 337147 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | |||||||||||||||||||||||| |||||||| || || || || || ||||| || Sbjct 337148 AGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCG 337207 Query 11774 ACTACTCTTTCTCC 11787 || ||||| || || Sbjct 337208 ACCACTCTCTCACC 337221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468323908278880