Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq470 86.0 5e-12 >seq470 Length=704619 Score = 86.0 bits (94), Expect = 5e-12 Identities = 120/167 (72%), Gaps = 6/167 (4%) Strand=Plus/Plus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 |||| || ||||| || || |||| || || || || | |||||||| || || || | Sbjct 26751 TCAGCCCTGTGACATGGGCAATCATGTATGTGAGCAGCGAATAGCTGGCAATATTGAAAG 26810 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCC---CC 21105 | || || || ||||| || | |||||||||||||| ||||| ||||| || || | Sbjct 26811 GCACTCCTAGTCCCATATCTCCAGACCTCTGGTACAGTTGGCAAGACAGTTCACCATTCA 26870 Query 21106 GAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 || || || ||||| || | | | || ||||| || | ||||||| Sbjct 26871 GA---ACATAGAACTGGCAGAGAGCATGGCAAGGCGGCAAAGCCATC 26914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427597165836960