Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq384 138 1e-27 seq448 113 4e-20 >seq384 Length=852418 Score = 138 bits (152), Expect = 1e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608 ||||| || | ||| | || || ||||| || ||||| || ||| || |||| | Sbjct 86005 ACGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCC 86064 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 |||||| ||||| ||||||||| ||||||| | |||||||||||||| ||||||||||| Sbjct 86065 GTCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTT 86124 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 ||| ||| || || | | || | ||||| ||||||| ||||||| || | Sbjct 86125 GTCTTGGATCTTGGCCTTCACATTCTCTATGGTGTCACTGGGCTCGACCTCAAGAGTGAT 86184 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| ||||| ||||| ||||| || ||||| Sbjct 86185 TGTCTTGCCAGTCAAGGTTTTCACGAAGATCTGCAT 86220 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 139534 ATGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC 139593 || ||| |||| | ||||| || | ||| | || ||||| || || ||||| || || Sbjct 85762 ATTGCCTCCTCTCAGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTC 85821 Query 139594 GCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGG 139653 || |||| | ||||| ||||| |||||||| ||||||| | ||||||||||| Sbjct 85822 AGACAGGGTGCGCCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCGGG 85881 Query 139654 AGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTC 139713 ||| |||||||||||||| ||| || || | | ||| | ||||| ||||||| Sbjct 85882 AGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTC 85941 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || |||| ||| | |||||||| |||| || || ||||| || ||||| Sbjct 85942 AACTTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 85992 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| | ||||| || | ||| | || ||||| || || ||||| || ||| Sbjct 86221 GCCACCTCTCAGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 86280 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| | ||||| ||||| || ||||| ||||||| | |||||||||||||| Sbjct 86281 CAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGAGG 86340 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||||||||| ||| || |||| | ||| | ||||| ||||||| || Sbjct 86341 AATGCCTTCTTTGTCTTGGATCTTGGCCTTTACGTTTTCAATGGTGTCACTGGGCTCGAC 86400 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | |||||||| |||| || || || || || ||||| Sbjct 86401 CTCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 86448 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608 ||||| || | ||| | || || ||||| || ||||| || || || |||| | Sbjct 86461 ACGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCC 86520 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 |||||| ||||| |||||||| ||||||| | |||||||||||||| ||||||||||| Sbjct 86521 GTCTTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTT 86580 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 ||| ||| || || | | || | |||||| | ||||| ||||||| || | Sbjct 86581 GTCTTGGATCTTGGCCTTCACATTCTCTATGGTGTCGCTAGGCTCGACCTCAAGAGTGAT 86640 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| |||| || || || || || ||||| Sbjct 86641 GGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 86676 >seq448 Length=747048 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || ||| || |||| | ||||| ||||| || ||| Sbjct 684080 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCA 684021 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| | ||||| | ||||||||||| || |||||||| ||||| ||| || || Sbjct 684020 GCAAAAATCAGCCTCTGCTGATCGGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTG 683961 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | |||||| ||||||||||||| | ||| | ||||||||||| | || Sbjct 683960 ACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTC 683901 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 683900 TTCACGAAGATCTGCAT 683884 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || | ||| | || ||||| || || ||||| || ||| || |||| | Sbjct 684796 CGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCA 684737 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || |||||| | ||||| | ||||||||||| || |||||||| ||| Sbjct 684736 TCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCGGGGGGGATGCCTTCCTTG 684677 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | || || ||||||||||||| | ||| | Sbjct 684676 TCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCACTGGGCTCCACCTCCAAGGTGATG 684617 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || || ||||| || || ||||| || ||||| Sbjct 684616 GTTTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 684582 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || ||| || |||| | |||||| ||||| || ||| Sbjct 684550 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCA 684491 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| | ||||| | ||||||||||| || |||||||| ||||| ||| || || Sbjct 684490 GCAAAAATCAGCCTCTGCTGATCGGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTG 684431 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||||||||| | ||| | || || || |||| || Sbjct 684430 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTTTTACCAGTCAGGGTC 684371 Query 139748 TTTACGAATATTTGCAT 139764 || || || || ||||| Sbjct 684370 TTCACAAAGATCTGCAT 684354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495851300158400